WormBase Tree Display for Gene: WBGene00109165
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| WBGene00109165 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 8 | |||||||
| Name | CGC_name | Ppa-gar-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA19611 | ||||||||
| Molecular_name | PPA19611 | ||||||||
| PPA19611.1 | |||||||||
| PP55868 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000076446 | ||||||||
| GENEPREDICTION_SNAP300000076447 | |||||||||
| UMM-S285-10.20 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-gar-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00109166 | ||||
| 3 | 24 Nov 2017 09:46:52 | WBPerson4055 | Event | Acquires_merge | WBGene00202668 | ||||
| 4 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-gar-1 | ||||
| 5 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 08 May 2019 10:09:23 | WBPerson1983 | Name_change | CGC_name | Ppa-gar-1 | ||||
| 7 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 8 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-gar-1 | ||||
| Acquires_merge | WBGene00109166 | ||||||||
| WBGene00202668 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | gar | ||||||||
| RNASeq_FPKM | WBls:0000032 | 3.53861 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.17954 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| RNASeq.pristionchus.WBls:0000101.control_mean | |||||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00182096 | ||||||||
| 00182097 | |||||||||
| 00182098 | |||||||||
| 00182099 | |||||||||
| 00182100 | |||||||||
| Ortholog (30) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Automated_description | Predicted to enable G protein-coupled acetylcholine receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Is an ortholog of C. elegans gar-1. In C. elegans, gar-1 is involved in cholinergic synaptic transmission. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA19611 | |||||||
| Corresponding_transcript | PPA19611.1 | ||||||||
| Other_sequence | JI168572.1 | ||||||||
| TSC03039_1 | |||||||||
| Dviv_isotig25020 | |||||||||
| ASC02740_1 | |||||||||
| TS04217 | |||||||||
| FJ609743.1 | |||||||||
| AS01817 | |||||||||
| JI172500.1 | |||||||||
| FJ609744.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_32001 | |||||||
| GPL14372_Probes_32002 | |||||||||
| GPL14372_Probes_32003 | |||||||||
| GPL14372_Probes_32004 | |||||||||
| GPL14372_Probes_88995 | |||||||||
| GPL14372_Probes_88996 | |||||||||
| GPL14372_Probes_88998 | |||||||||
| GPL14372_Probes_88999 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-gar-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-gar-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
