WormBase Tree Display for Gene: WBGene00109274
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| WBGene00109274 | SMap | S_parent | Sequence | PPA_ChrX | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 9 | |||||||
| Name | CGC_name | Ppa-lrk-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA19720 | ||||||||
| Molecular_name | PPA19720 | ||||||||
| PPA19720.1 | |||||||||
| PP61275 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000076555 | ||||||||
| GENEPREDICTION_SNAP300000076556 | |||||||||
| GENEPREDICTION_SNAP300000076558 | |||||||||
| UMM-S285-5.6 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-lrk-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:06 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 13:24:32 | WBPerson2970 | Name_change | CGC_name | removed | ||||
| 3 | 17 Nov 2017 15:19:42 | WBPerson4055 | Name_change | CGC_name | Ppa-lrk-1 | ||||
| 4 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00109275 | ||||
| 5 | 24 Nov 2017 09:46:50 | WBPerson4055 | Event | Acquires_merge | WBGene00109277 | ||||
| 6 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 7 | 08 May 2019 10:09:26 | WBPerson1983 | Name_change | CGC_name | Ppa-lrk-1 | ||||
| 8 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 9 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-lrk-1 | ||||
| Acquires_merge | WBGene00109275 | ||||||||
| WBGene00109277 | |||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lrk | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 0.72924 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 2.18772 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00182156 | ||||||||
| 00182157 | |||||||||
| 00182158 | |||||||||
| Ortholog (32) | |||||||||
| Paralog (13) | |||||||||
| Structured_description | Automated_description | Predicted to enable ATP binding activity and protein kinase activity. Is an ortholog of C. elegans lrk-1. In C. elegans, lrk-1 is involved in several processes, including axon extension involved in axon guidance; cellular localization; and negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA19720 | |||||||
| Corresponding_transcript | PPA19720.1 | ||||||||
| Other_sequence | JI165362.1 | ||||||||
| Dviv_isotig24879 | |||||||||
| JI163915.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_4251 | |||||||
| GPL14372_Probes_4252 | |||||||||
| GPL14372_Probes_4255 | |||||||||
| GPL14372_Probes_43561 | |||||||||
| GPL14372_Probes_43562 | |||||||||
| GPL14372_Probes_43563 | |||||||||
| GPL14372_Probes_43566 | |||||||||
| GPL14372_Probes_43567 | |||||||||
| GPL14372_Probes_43568 | |||||||||
| Expression_cluster | WBPaper00041606:PP_X.nematophila_regulated | ||||||||
| Remark | PPA19720 replaces Ppa-lrk-1 as Public_name | Curator_confirmed | WBPerson2970 | ||||||
| [190208 pad] The CGC name Ppa-lrk-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| [210528 pad] The CGC name Ppa-lrk-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
