WormBase Tree Display for Gene: WBGene00110133

WBGene00110133 SMap: S_parent: Sequence: PPA_ChrX
  Identity: Version: 6
    Name: CGC_name: Ppa-madd-4 From_analysis: Inferred_from_orthology
      Sequence_name: PPA20579
      Molecular_name: PPA20579
        PPA20579.1
        PP57873
      Other_name: GENEPREDICTION_SNAP300000079672
        UMM-S2845-8.3 Person_evidence: WBPerson606
      Public_name: Ppa-madd-4
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 20 Mar 2018 10:26:11 WBPerson4025 Name_change: CGC_name: Ppa-madd-4
        3 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:25 WBPerson1983 Name_change: CGC_name: Ppa-madd-4
        5 28 May 2021 19:05:19 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:28 WBPerson1983 Name_change: CGC_name: Ppa-madd-4
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: madd
    RNASeq_FPKM: WBls:0000032 0 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 1.24745 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
        0 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        3.74236 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
    Ortholog (35)
    Paralog: WBGene00095949 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00097611 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00106995 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00114522 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00115888 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00116002 Pristionchus pacificus From_analysis: WormBase-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Thrombospondin type-1 (TSP1) repeat; Immunoglobulin I-set; Thrombospondin type-1 (TSP1) repeat superfamily; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin-like domain superfamily; Immunoglobulin subtype; and Thrombospondin type 1 domain. Is an ortholog of C. elegans madd-4. In C. elegans, madd-4 is involved in dorsal/ventral axon guidance and synapse organization. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA20579
    Corresponding_transcript: PPA20579.1
    Other_sequence: PPC13914_1
      PPC07474_1
  Experimental_info: Microarray_results: GPL14372_Probes_22229
      GPL14372_Probes_74839
      GPL14372_Probes_74840
      GPL14372_Probes_74841
    Expression_cluster: WBPaper00041207:PP_dauer_down
  Remark: [190208 pad] The CGC name Ppa-madd-4 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [210528 pad] The CGC name Ppa-madd-4 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene