WormBase Tree Display for Gene: WBGene00113211

WBGene00113211 SMap: S_parent: Sequence: PPA_ChrV
  Identity: Version: 5
    Name: CGC_name: Ppa-unc-40 From_analysis: Inferred_from_orthology
      Sequence_name: PPA23657
      Molecular_name: PPA23657
        PPA23657.1
        PP54034
      Other_name: GENEPREDICTION_SNAP300000080543
        UMM-S13-5.23 Person_evidence: WBPerson606
      Public_name: Ppa-unc-40
    Species: Pristionchus pacificus
    History: Version_change: 1 06 Aug 2008 09:05:06 WBPerson4055 Event: Imported: from NGASP
        2 08 Feb 2019 15:42:27 WBPerson1983 Name_change: CGC_name: Removed
        3 08 May 2019 10:09:25 WBPerson1983 Name_change: CGC_name: Ppa-unc-40
        4 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
        5 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Ppa-unc-40
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: unc
    RNASeq_FPKM: WBls:0000032 3.96731 From_analysis: RNASeq.pristionchus.WBls:0000032.control_mean
            RNASeq.pristionchus.WBls:0000032.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659
      WBls:0000101 12.1812 From_analysis: RNASeq.pristionchus.WBls:0000101.control_mean
            RNASeq.pristionchus.WBls:0000101.control_median
            RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656
        3.96731 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_median
        5.38284 From_analysis: RNASeq.pristionchus.total_over_all_stages.control_mean
    Ortholog: WBGene00126223 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00160417 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00162859 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00035291 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00226094 Brugia malayi From_analysis: WormBase-Compara
      WBGene00006776 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00210117 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00215004 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00238359 Onchocerca volvulus From_analysis: WormBase-Compara
      CBOVI.g10693 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6080 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g6416 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9390 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g9393 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17082 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g7666 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g1487 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g18061 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g9327 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g23251 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00095.g4203 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_00095.g4204 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13295.g24171 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-unc-40 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g15165 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00491.g12060 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06376 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001309 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06699 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g17054 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10282300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      WBGene00060358 Caenorhabditis remanei From_analysis: WormBase-Compara
      chrI_pilon.g978 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00262661 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00297116 Trichuris muris From_analysis: WormBase-Compara
      WBGene00301123 Trichuris muris From_analysis: WormBase-Compara
    Paralog (12)
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; Neogenin; Immunoglobulin I-set domain; Immunoglobulin I-set; Fibronectin type III; Immunoglobulin-like fold; Immunoglobulin subtype 2; Immunoglobulin-like domain superfamily; Fibronectin type III domain; and Immunoglobulin subtype. Is an ortholog of C. elegans unc-40. In C. elegans, unc-40 is involved in several processes, including axon guidance; regulation of locomotion; and sex differentiation. Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: PPA23657
    Corresponding_transcript: PPA23657.1
    Other_sequence (16)
  Experimental_info: Microarray_results: GPL14372_Probes_6202
      GPL14372_Probes_6204
      GPL14372_Probes_45985
      GPL14372_Probes_45986
      GPL14372_Probes_45987
      GPL14372_Probes_47987
      GPL14372_Probes_47988
  Reference: WBPaper00043625
    WBPaper00048121
  Remark: [190208 pad] The CGC name Ppa-unc-40 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [200603 pad] The CGC name Ppa-unc-40 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene