WormBase Tree Display for Gene: WBGene00116813
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| WBGene00116813 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-dlg-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA27259 | ||||||||
| Molecular_name | PPA27259 | ||||||||
| PPA27259.1 | |||||||||
| PP72254 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000084080 | ||||||||
| UMM-S207-18.2 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-dlg-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| 2 | 18 Nov 2010 11:54:47 | WBPerson2970 | Name_change | CGC_name | Ppa-dlg-1 | ||||
| 3 | 08 Feb 2019 15:42:28 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-dlg-1 | ||||
| 5 | 28 May 2021 19:05:20 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:29 | WBPerson1983 | Name_change | CGC_name | Ppa-dlg-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dlg | ||||||||
| RNASeq_FPKM | WBls:0000032 | 1.07499 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.07499 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | ||||||
| 1.20467 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | |||||||
| 2.53901 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| Ortholog (33) | |||||||||
| Structured_description | Automated_description | Is predicted to encode a protein with the following domains: L27-1; SH3-like domain superfamily; L27_1; SH3 domain; L27 domain superfamily; Guanylate kinase/L-type calcium channel beta subunit; P-loop containing nucleoside triphosphate hydrolase; PDZ superfamily; Guanylate kinase; and PDZ domain. Is an ortholog of C. elegans dlg-1. In C. elegans, dlg-1 is involved in embryo development and zonula adherens assembly. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA27259 | |||||||
| Corresponding_transcript | PPA27259.1 | ||||||||
| Other_sequence (79) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_20452 | |||||||
| GPL14372_Probes_20453 | |||||||||
| GPL14372_Probes_20454 | |||||||||
| GPL14372_Probes_20455 | |||||||||
| GPL14372_Probes_20456 | |||||||||
| GPL14372_Probes_72605 | |||||||||
| GPL14372_Probes_72606 | |||||||||
| GPL14372_Probes_72607 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-dlg-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-dlg-1 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
