WormBase Tree Display for Gene: WBGene00118218
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| WBGene00118218 | SMap | S_parent | Sequence | PPA_ChrI | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | Ppa-bar-1 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA28664 | ||||||||
| Molecular_name | PPA28664 | ||||||||
| PPA28664.1 | |||||||||
| PP54230 | |||||||||
| Other_name | GENEPREDICTION_SNAP300000085450 | ||||||||
| UMM-S207-1.27 | Person_evidence | WBPerson606 | |||||||
| Public_name | Ppa-bar-1 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 06 Aug 2008 09:05:07 | WBPerson4055 | Event | Imported | from NGASP | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bar | ||||||||
| Allele | WBVar00597655 | Paper_evidence | WBPaper00040023 | ||||||
| RNASeq_FPKM | WBls:0000032 | 4.16484 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 3.0278 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 4.16484 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 4.91855 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00186205 | ||||||||
| 00186206 | |||||||||
| Ortholog (28) | |||||||||
| Paralog | WBGene00275329 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | Ppa-bar-1 encodes one of two P. pacificus beta-catenin-like proteins; Ppa-bar-1 mutants are induction vulvaless with P(5-8).p remaining epidermal; Ppa-bar-1 has a maternal contribution and the progeny of homozygous mutants are maternal-affect embryonic lethal. | Paper_evidence | WBPaper00031445 | |||||
| Person_evidence | WBPerson606 | ||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 01 Jul 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable cadherin binding activity. Predicted to be involved in cell adhesion. Is an ortholog of C. elegans bar-1. In C. elegans, bar-1 is involved in several processes, including nematode larval development; regulation of locomotion; and reproductive behavior. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA28664 | |||||||
| Corresponding_transcript | PPA28664.1 | ||||||||
| Other_sequence | CSC00081_1 | ||||||||
| PP00263 | |||||||||
| PPC01306_1 | |||||||||
| PPC20265_1 | |||||||||
| FD517751.1 | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_78303 | |||||||
| GPL14372_Probes_78304 | |||||||||
| GPL14372_Probes_78305 | |||||||||
| GPL14372_Probes_78306 | |||||||||
| GPL14372_Probes_78307 | |||||||||
| Reference (12) | |||||||||
| Method | Gene |
