WormBase Tree Display for Gene: WBGene00125840

WBGene00125840 SMap: S_parent: Sequence: Cjap.Contig18226
  Identity: Version: 4
    Name: CGC_name: Cjp-smg-1 From_analysis: Inferred_from_orthology
      Sequence_name: CJA06636
      Molecular_name: CJA06636
        CJA06636.1
        JA42487
      Public_name: Cjp-smg-1
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:21 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-smg-1
        2 27 Jan 2009 15:19:29 WBPerson4055 Name_change: CGC_name: Removed
        3 29 Jul 2011 11:13:37 WBPerson4055 Event: Imported: Augustus import
        4 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cjp-smg-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: smg
    RNASeq_FPKM: WBls:0000004 10.3686 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 13.0035 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 8.43303 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        9.12352 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        9.81401 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 10.7879 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        12.1335 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        12.6888 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
        13.7415 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        5.35904 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        5.56562 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        6.13186 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        6.57023 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        8.67906 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        9.12231 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
      WBls:0000101 8.8152 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
        9.81401 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
    GO_annotation: 00191976
      00191977
      00191978
    Ortholog (33)
    Paralog: WBGene00119525 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00120166 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00124463 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00126088 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00129139 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00134619 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00213162 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00217436 Caenorhabditis japonica From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and phosphorylation. Is an ortholog of C. elegans smg-1. In C. elegans, smg-1 is involved in male genitalia development; nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; and obsolete hermaphrodite genitalia development. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA06636
    Corresponding_transcript: CJA06636.1
    Other_sequence (17)
  Experimental_info: Expr_pattern: Expr1083344
      Expr1084920
    Microarray_results: GPL14145_CJA06636_3917-3976_0.936_1_A
      GPL14145_CJA23885_2335-2394_0.948_1_A
      GPL14145_CJA23885_2343-2402_0.942_3_C
      GPL14145_CJA23885_2407-2466_0.947_2_B
  Method: Gene