WormBase Tree Display for Gene: WBGene00135502

WBGene00135502 SMap: S_parent: Sequence: Cjap.Contig16754
  Identity: Version: 2
    Name: CGC_name: Cjp-nhr-8 From_analysis: Inferred_from_orthology
      Sequence_name: CJA16298
      Molecular_name: CJA16298a
        CJA16298a.1
        JA43493
        CJA16298b
        JA54058
        CJA16298b.1
      Public_name: Cjp-nhr-8
    Species: Caenorhabditis japonica
    History: Version_change: 1 29 Aug 2008 14:34:23 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cjp-nhr-8
        2 29 Jul 2011 11:13:38 WBPerson4055 Event: Imported: Augustus import
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhr
    RNASeq_FPKM: WBls:0000004 33.8696 From_analysis: RNASeq.japonica.WBls:0000004.control_mean
            RNASeq.japonica.WBls:0000004.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
      WBls:0000027 30.0056 From_analysis: RNASeq.japonica.WBls:0000027.control_mean
            RNASeq.japonica.WBls:0000027.control_median
            RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
      WBls:0000038 31.5948 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
        34.0426 From_analysis: RNASeq.japonica.WBls:0000038.control_mean
            RNASeq.japonica.WBls:0000038.control_median
        36.4904 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
      WBls:0000041 12.7571 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
        13.9769 From_analysis: RNASeq.japonica.WBls:0000041.control_mean
        14.5713 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
        14.8483 From_analysis: RNASeq.japonica.WBls:0000041.control_median
        15.1254 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
        15.7242 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
        17.8973 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
        19.4249 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
        6.98716 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
        9.32753 From_analysis: RNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
      WBls:0000101 15.7242 From_analysis: RNASeq.japonica.total_over_all_stages.control_median
        18.7519 From_analysis: RNASeq.japonica.total_over_all_stages.control_mean
    GO_annotation: 00199650
      00199651
      00199652
      00199653
    Ortholog (19)
    Paralog (105)
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-8. In C. elegans, nhr-8 is involved in cholesterol homeostasis. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CJA16298a
      CJA16298b
    Corresponding_transcript: CJA16298a.1
      CJA16298b.1
    Other_sequence: Oden_contig20559
      ASC13176_1
      Oden_isotig10723
      Tcol_isotig22505
      Dviv_isotig20442
  Method: Gene