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WormBase Tree Display for Gene: WBGene00136945

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Name Class

WBGene00136945SMapS_parentSequenceCjap.Contig17636
IdentityVersion3
NameCGC_nameCjp-unc-52From_analysisInferred_from_orthology
Sequence_nameCJA17741
Molecular_nameCJA17741a
CJA17741a.1
JA48430
CJA17741b
JA43283
CJA17741b.1
Public_nameCjp-unc-52
SpeciesCaenorhabditis japonica
HistoryVersion_change129 Aug 2008 14:34:23WBPerson4055EventImportedNGASP import
229 Jul 2011 11:13:38WBPerson4055EventImportedAugustus import
320 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCjp-unc-52
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classunc
RNASeq_FPKMWBls:0000004110.149From_analysisRNASeq.japonica.WBls:0000004.control_mean
RNASeq.japonica.WBls:0000004.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100095
WBls:0000027105.938From_analysisRNASeq.japonica.WBls:0000027.control_mean
RNASeq.japonica.WBls:0000027.control_median
RNASeq.japonica.WBStrain00041019.WBls:0000027.Unknown.WBbt:0007833.SRP006033.SRX100090
WBls:0000038159.927From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100091
162.98From_analysisRNASeq.japonica.WBls:0000038.control_mean
RNASeq.japonica.WBls:0000038.control_median
166.033From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100092
WBls:000004117.405From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191961
22.2418From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191960
22.8065From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191963
25.3571From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191962
26.9642From_analysisRNASeq.japonica.WBls:0000041.control_median
28.5713From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP016006.SRX191959
29.3654From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191964
33.2336From_analysisRNASeq.japonica.WBls:0000041.control_mean
55.9782From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Female.WBbt:0007833.SRP006033.SRX100094
64.1432From_analysisRNASeq.japonica.WBStrain00041019.WBls:0000041.Male.WBbt:0007833.SRP006033.SRX100093
WBls:000010129.3654From_analysisRNASeq.japonica.total_over_all_stages.control_median
62.1474From_analysisRNASeq.japonica.total_over_all_stages.control_mean
Ortholog (33)
Paralog (13)
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Immunoglobulin I-set domain; Immunoglobulin I-set; Immunoglobulin-like domain; Immunoglobulin-like fold; Laminin IV; Laminin-type EGF domain; Immunoglobulin subtype 2; Low-density lipoprotein receptor domain class A; Immunoglobulin domain; Immunoglobulin-like domain superfamily; Laminin EGF domain; Low-density lipoprotein (LDL) receptor class A repeat; Immunoglobulin subtype; Laminin B (Domain IV); and LDL receptor-like superfamily. Is an ortholog of C. elegans unc-52. In C. elegans, unc-52 is involved in several processes, including hemidesmosome assembly; muscle cell cellular homeostasis; and muscle structure development.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCJA17741a
CJA17741b
Corresponding_transcriptCJA17741a.1
CJA17741b.1
Other_sequenceJI221716.1
CBC12429_1
Dviv_isotig32666
JI472463.1
JI168289.1
ACC37336_1
Tcol_isotig25564
MHC08666_1
AA294548.1
MH05821
MC03083
MH07789
JI460032.1
BMC09974_1
BMC11316_1
JI217935.1
FG581144.1
MI02757
DN190843.1
Oden_isotig28102
JI468182.1
CR03618
DN557676.1
ACC16243_1
FG348684.1
MA03222
JI241457.1
AI096109.1
Dviv_isotig30728
EX013376.1
EW742700.1
EX555074.1
JI239881.1
JI237817.1
MH10797
OVC03932_1
JO472119.1
JI164586.1
JI231228.1
MI05294
CJC05184_1
HC05982
MA02923
FG584741.1
ACC31221_1
JO472841.1
FG583325.1
JI236556.1
Tcir_isotig26755
CD374651.1
FG580380.1
Dviv_isotig00850
JI469947.1
JI479806.1
Tcol_isotig15768
SS00655
HG04561
JI470916.1
Dviv_isotig34766
FG583849.1
AJ544628.1
JI477288.1
FG974558.1
JI470676.1
Acan_isotig17249
Tcol_isotig19001
JI480574.1
OVC00746_1
AI132759.1
JI163833.1
JI171626.1
FC817359.1
JI179343.1
JI460270.1
SS02042
LSC00772_1
SS02021
JI255222.1
MIC05728_1
JI215053.1
EX550994.1
CR06729
JI181763.1
CRC11288_1
HC05944
HCC00246_1
FG976173.1
Oden_isotig29369
SSC05847_1
HBC17672_1
TCC00662_1
Oden_isotig19051
HBC15168_1
FG581088.1
MJ04757
Name_isotig03336
AAC00201_1
MI06012
BMC09318_1
FG585808.1
DI00788
ACC34876_1
GE638451.1
GO239776.1
HBC20053_1
JI170330.1
MPC00357_1
GE638882.1
FG586134.1
MJC03901_1
FG347948.1
Dviv_isotig00851
MP01368
Dviv_isotig15426
DIC00298_1
HCC00121_1
AS17312
CJC04271_1
GT571142.1
ACC14269_1
JI166241.1
GE637995.1
JI245286.1
JI249517.1
Tcir_isotig13912
JI166802.1
JI163789.1
Tcol_isotig08454
GR16239
JI174293.1
HC05947
EX537642.1
SSC02662_1
FK801522.1
Tcol_isotig24487
SRC01497_1
JI471327.1
SR03042
Tcol_isotig19102
TX01158
HGC11484_1
CBC01765_1
Oden_isotig18007
ACC24370_1
JI478375.1
EW741504.1
AW980135.1
MC03040
GO253113.1
MAC02587_1
CRC00301_1
Dviv_isotig22954
JI473845.1
JI241444.1
FC552815.1
FG581027.1
CRC04014_1
JI462424.1
Tcol_isotig08453
JI220433.1
EX542149.1
HCC00118_1
SR04778
JI176794.1
Name_isotig09025
WBC00541_1
JI163784.1
Y16017.1
Hbac_isotig01765
Experimental_infoExpr_patternExpr1070428
Expr1072054
Microarray_resultsGPL14145_CJA03850_3927-3986_0.921_2_B
GPL14145_CJA03850_3944-4003_0.923_1_A
GPL14145_CJA03850_3956-4015_0.918_3_C
GPL14145_CJA17741_4016-4075_0.905_2_B
GPL14145_CJA17741_4263-4322_0.901_3_C
GPL14145_CJA17741_4275-4334_0.929_1_A
MethodGene