WormBase Tree Display for Gene: WBGene00139420

WBGene00139420 SMap: S_parent: Sequence: Cbre_Contig92
  Identity: Version: 1
    Name: CGC_name: Cbn-hcf-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBN00695
      Molecular_name: CBN00695
        CBN00695.1
        CN02004
      Other_name: CBN00695
      Public_name: Cbn-hcf-1
    Species: Caenorhabditis brenneri
    History: Version_change: 1 30 Oct 2008 10:39:28 WBPerson4055 Event: Imported: from NGASP
              Name_change: CGC_name: Cbn-hcf-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hcf
    RNASeq_FPKM: WBls:0000002 (11)
      WBls:0000004 0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
        34.9146 From_analysis: RNASeq.brenneri.WBls:0000004.control_mean
            RNASeq.brenneri.WBls:0000004.control_median
        69.8291 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
      WBls:0000024 12.3636 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
        12.6024 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
        12.8908 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
        13.1316 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
        15.4368 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
        0 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
      WBls:0000038 8.22358 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
        8.73595 From_analysis: RNASeq.brenneri.WBls:0000038.control_mean
            RNASeq.brenneri.WBls:0000038.control_median
        9.24832 From_analysis: RNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
      WBls:0000041 (17)
      WBls:0000101 15.1423 From_analysis: RNASeq.brenneri.total_over_all_stages.control_mean
        9.72906 From_analysis: RNASeq.brenneri.total_over_all_stages.control_median
    Ortholog (31)
    Paralog: WBGene00193720 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
            GeneACeDB-Compara
      WBGene00153743 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
      WBGene00159827 Caenorhabditis brenneri From_analysis: WormBase-Compara
            GeneACeDB-Compara
    Structured_description: Automated_description: Is predicted to encode a protein with the following domains: Fibronectin type III superfamily; Kelch-type beta propeller; Fibronectin type III; Immunoglobulin-like fold; Galactose oxidase, central domain; Kelch motif; Kelch repeat type 1; and Host cell factor 1. Is an ortholog of C. elegans hcf-1. In C. elegans, hcf-1 is involved in several processes, including dauer exit; determination of adult lifespan; and regulation of DNA-templated transcription. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBN00695
    Corresponding_transcript: CBN00695.1
    Other_sequence: CBC04896_1
      EY472262.1
      Oden_isotig21290
      ACC14705_1
      ES739449.1
      CJC08311_1
      EY459300.1
      HBC01528_1
  Experimental_info: Microarray_results: GPL14142_CBN00695_1939-1998_0.899_17_A
      GPL14142_CBN00695_2035-2094_0.743_233_C
  Method: Gene