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WormBase Tree Display for Gene: WBGene00148508

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Name Class

WBGene00148508SMapS_parentSequenceCbre_Contig57
IdentityVersion2
NameCGC_nameCbn-sorb-1.1From_analysisInferred_from_orthology
Sequence_nameCBN09783
Molecular_nameCBN09783
CBN09783.1
CN19609
Public_nameCbn-sorb-1.1
SpeciesCaenorhabditis brenneri
HistoryVersion_change101 Oct 2008 13:29:51WBPerson4055EventImportedfrom NGASP
220 Mar 2018 10:26:12WBPerson4025Name_changeCGC_nameCbn-sorb-1.1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsorb
RNASeq_FPKMWBls:00000020.275661From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565030
0.421245From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565029
0.544442From_analysisRNASeq.brenneri.WBls:0000002.control_median
0.665484From_analysisRNASeq.brenneri.WBls:0000002.control_mean
0.667639From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565024
0.78865From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565025
0.895656From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565031
0.925961From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565028
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565023
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565026
RNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565027
2.68003From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000002.Unknown.WBbt:0007833.SRP042651.SRX565032
WBls:00000041.06271From_analysisRNASeq.brenneri.WBls:0000004.control_mean
RNASeq.brenneri.WBls:0000004.control_median
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100769
2.12542From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000004.Unknown.WBbt:0007833.SRP006033.SRX100770
WBls:000002412.1607From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311813
16.6921From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311810
17.0708From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311812
18.1354From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311814
19.4487From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311811
0From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000024.Unknown.WBbt:0007833.SRP026198.SRX311815
WBls:00000387.65243From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100772
8.1639From_analysisRNASeq.brenneri.WBls:0000038.control_mean
RNASeq.brenneri.WBls:0000038.control_median
8.67537From_analysisRNASeq.brenneri.WBStrain00041997.WBls:0000038.Unknown.WBbt:0007833.SRP006033.SRX100771
WBls:0000041 (16)
WBls:00001011.40556From_analysisRNASeq.brenneri.total_over_all_stages.control_median
2.28729From_analysisRNASeq.brenneri.total_over_all_stages.control_mean
Ortholog (33)
ParalogWBGene00190078Caenorhabditis brenneriFrom_analysisInparanoid_8
WBGene00139053Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00141216Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00149939Caenorhabditis brenneriFrom_analysisWormBase-Compara
GeneACeDB-Compara
WBGene00158063Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00163512Caenorhabditis brenneriFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: SH3-like domain superfamily; SH3 domain; Vinexin; SoHo domain; and Variant SH3 domain. Is an ortholog of C. elegans sorb-1. In C. elegans, sorb-1 is involved in maintenance of mitochondrion location and sarcomere organization.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBN09783
Corresponding_transcriptCBN09783.1
Other_sequence (13)
Experimental_infoMicroarray_resultsGPL14142_CBN09783_1088-1147_0.788_137_A
MethodGene