WormBase Tree Display for Gene: WBGene00194828
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| WBGene00194828 | SMap | S_parent | Sequence | B0361 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | mir-2214 | Person_evidence | WBPerson18 | |||||
| Sequence_name | B0361.12 | ||||||||
| Molecular_name | B0361.12 | ||||||||
| B0361.12a | |||||||||
| B0361.12b | |||||||||
| Other_name | cel-mir-2214 | Remark | miRBase V21 import | ||||||
| CELE_B0361.12 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | mir-2214 | ||||||||
| DB_info | Database | miRBase | acc | MI0010964 | |||||
| NDB | locus_tag | CELE_B0361.12 | |||||||
| NCBI | gene | 13190112 | |||||||
| RefSeq | protein | NR_052444.1 | |||||||
| RNAcentral | URSid | URS00000E4EA9 | |||||||
| URS00002F07C6 | |||||||||
| URS00005E309B | |||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 16 Oct 2009 09:28:36 | WBPerson1867 | Event | Created | |||
| 2 | 22 Feb 2010 13:22:09 | WBPerson2970 | Name_change | CGC_name | mir-2214 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001265 | |||||||
| Gene_class | mir | ||||||||
| Allele | WBVar01500260 | ||||||||
| WBVar00838399 | |||||||||
| WBVar00838400 | |||||||||
| WBVar01499774 | |||||||||
| WBVar00401368 | |||||||||
| WBVar01265306 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including glp-4; prg-1; and alg-1 based on RNA-seq studies. Is affected by multi-walled carbon nanotube and graphene oxide based on RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_transcript | B0361.12 | |||||||
| B0361.12a | |||||||||
| B0361.12b | |||||||||
| Experimental_info | RNAi_result | WBRNAi00005171 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00038972 | Inferred_automatically | RNAi_primary | |||||||
| Expression_cluster (18) | |||||||||
| Map_info | Map | III | Position | -0.761115 | Error | 0.000753 | |||
| Positive | Positive_clone | B0361 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| The annotation of cel-mir-2214 as a microRNA was questioned by Jan et al (Nature 2011 469:97-101). The pattern of reads from deep sequencing datasets aggregated in miRBase and mapping to the locus is not consistent with microRNA processing. The sequence is removed from miRBase 21. | |||||||||
| Method | Gene |
