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WormBase Tree Display for Gene: WBGene00223001

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Name Class

WBGene00223001SMapS_parentSequenceBm_v4_Chr2_contig_001
IdentityVersion6
NameCGC_nameBma-aff-1From_analysisInferred_from_orthology
Sequence_nameBm2740
Molecular_nameBm2740
Bm2740.1
BM40660
Other_nameBm-aff-1
TAG2740Curator_confirmedWBPerson4055
Bm1_09970ACurator_confirmedWBPerson4055
Bm1_09975ACurator_confirmedWBPerson4055
Bm1_09975Person_evidenceWBPerson5841
Bm1_09970Person_evidenceWBPerson5841
Public_nameBma-aff-1
SpeciesBrugia malayi
HistoryVersion_change110 Dec 2012 14:43:24WBPerson4055EventCreated
205 Jul 2013 11:43:21WBPerson4055Name_changeCGC_nameBma-aff-1
Other_nameBm-aff-1
308 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
427 Nov 2019 12:48:14WBPerson1983Name_changeCGC_nameBma-aff-1
504 Feb 2020 15:43:57WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:27WBPerson1983Name_changeCGC_nameBma-aff-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classaff
RNASeq_FPKMWBls:00000975.90115From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
0.139931From_analysisRNASeq.brugia.WBls:0000097.control_median
0.279862From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
1.13964From_analysisRNASeq.brugia.WBls:0000097.control_mean
0From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
2.7332From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
3.82479From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:00000780.282848From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
0.475091From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
0.582565From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
1.05412From_analysisRNASeq.brugia.WBls:0000078.control_mean
1.30029From_analysisRNASeq.brugia.WBls:0000078.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
1.32452From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
1.42497From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
1.98859From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
WBls:000008010.2841From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
11.0364From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
11.3074From_analysisRNASeq.brugia.WBls:0000080.control_median
11.5783From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
11.9187From_analysisRNASeq.brugia.WBls:0000080.control_mean
14.7762From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
WBls:0000081 (24)
WBls:000008210.1476From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
14.9373From_analysisRNASeq.brugia.WBls:0000082.control_mean
18.1575From_analysisRNASeq.brugia.WBls:0000082.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
18.3116From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
18.3726From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
9.6971From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
WBls:0000083 (79)
WBls:00000922.43592From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
2.70532From_analysisRNASeq.brugia.WBls:0000092.control_mean
RNASeq.brugia.WBls:0000092.control_median
2.97473From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:000009414.8809From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
15.4381From_analysisRNASeq.brugia.WBls:0000094.control_mean
RNASeq.brugia.WBls:0000094.control_median
15.9953From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00001012.05074From_analysisRNASeq.brugia.total_over_all_stages.control_median
4.11388From_analysisRNASeq.brugia.total_over_all_stages.control_mean
WBls:00006620From_analysisRNASeq.brugia.WBls:0000662.control_mean
RNASeq.brugia.WBls:0000662.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
RNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
WBls:00006630From_analysisRNASeq.brugia.WBls:0000663.control_mean
RNASeq.brugia.WBls:0000663.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
OrthologPan_g14076Panagrellus redivivusFrom_analysisWormBase-Compara
WBGene00247231Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00262246Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00267609Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00292150Trichuris murisFrom_analysisWormBase-Compara
WBGene00297133Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00222661Brugia malayiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Cell-cell fusogen EFF/AFF; Cell-cell fusogen EFF/AFF, domain 3; and Type I membrane glycoproteins cell-cell fusogen. Is an ortholog of C. elegans aff-1. In C. elegans, aff-1 is involved in regulation of egg-laying behavior and syncytium formation by plasma membrane fusion.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSBm2740
Corresponding_transcriptBm2740.1
Other_sequence (15)
Experimental_infoExpression_clusterWBPaper00045439:BM_Cluster_P9
WBPaper00051007:downregulated_M30_vs_L4
WBPaper00051007:upregulated_F30_vs_L4
WBPaper00059852:B.malayi_iL3_stage_downregulated_vs_L3Day9
WBPaper00059852:B.malayi_iL3_stage_downregulated_vs_L4
WBPaper00061765:Adult_vs_Micro_Downregulated
WBPaper00061765:L3_vs_Adult_Upregulated
WBPaper00061765:L4_vs_Adult_Downregulated
WBPaper00061765:L4_vs_Micro_Downregulated
ReferenceWBPaper00045439
Remark[190208 pad] The CGC name Bma-aff-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[200204 pad] The CGC name Bma-aff-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene