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WormBase Tree Display for Gene: WBGene00223542

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Name Class

WBGene00223542SMapS_parentSequenceBm_v4_Chr3_scaffold_001
IdentityVersion6
NameCGC_nameBma-lron-5From_analysisInferred_from_orthology
Sequence_nameBm3281
Molecular_nameBm3281
Bm3281.1
BM27310
Other_nameBm-lron-5
TAG3281Curator_confirmedWBPerson4055
Bm1_35935ACurator_confirmedWBPerson4055
Bm1_35935Person_evidenceWBPerson5841
Public_nameBma-lron-5
SpeciesBrugia malayi
HistoryVersion_change110 Dec 2012 14:43:24WBPerson4055EventCreated
205 Jul 2013 11:43:21WBPerson4055Name_changeCGC_nameBma-lron-5
Other_nameBm-lron-5
308 Feb 2019 15:42:27WBPerson1983Name_changeCGC_nameRemoved
408 May 2019 10:09:24WBPerson1983Name_changeCGC_nameBma-lron-5
528 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
628 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameBma-lron-5
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlron
RNASeq_FPKMWBls:00000977.48086From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
11.7133From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
0From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
2.85612From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
3.47466From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
4.09238From_analysisRNASeq.brugia.WBls:0000097.control_median
4.7101From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
5.23408From_analysisRNASeq.brugia.WBls:0000097.control_mean
8.65032From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:00000782.92476From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
3.93259From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
4.1546From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
4.2854From_analysisRNASeq.brugia.WBls:0000078.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
4.59866From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
5.36239From_analysisRNASeq.brugia.WBls:0000078.control_mean
8.51424From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
9.12649From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
WBls:00000802.01541From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
4.85885From_analysisRNASeq.brugia.WBls:0000080.control_mean
5.2857From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
5.64435From_analysisRNASeq.brugia.WBls:0000080.control_median
6.00301From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
6.13129From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
WBls:0000081 (24)
WBls:00000823.77463From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
4.18283From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
5.54662From_analysisRNASeq.brugia.WBls:0000082.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
5.97757From_analysisRNASeq.brugia.WBls:0000082.control_mean
7.43047From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
8.95331From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
WBls:0000083 (82)
WBls:00000924.86595From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
5.51376From_analysisRNASeq.brugia.WBls:0000092.control_mean
RNASeq.brugia.WBls:0000092.control_median
6.16157From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:00000944.89497From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
5.16399From_analysisRNASeq.brugia.WBls:0000094.control_mean
RNASeq.brugia.WBls:0000094.control_median
5.43302From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
WBls:00001014.40654From_analysisRNASeq.brugia.total_over_all_stages.control_median
4.86525From_analysisRNASeq.brugia.total_over_all_stages.control_mean
WBls:00006623.93727From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
4.17191From_analysisRNASeq.brugia.WBls:0000662.control_mean
RNASeq.brugia.WBls:0000662.control_median
4.40654From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:00006632.46092From_analysisRNASeq.brugia.WBls:0000663.control_mean
RNASeq.brugia.WBls:0000663.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
Contained_in_operonBMOP2327
Ortholog (27)
ParalogWBGene00220396Brugia malayiFrom_analysisWormBase-Compara
WBGene00222309Brugia malayiFrom_analysisWormBase-Compara
WBGene00223030Brugia malayiFrom_analysisWormBase-Compara
WBGene00223240Brugia malayiFrom_analysisWormBase-Compara
WBGene00225119Brugia malayiFrom_analysisWormBase-Compara
WBGene00226191Brugia malayiFrom_analysisWormBase-Compara
WBGene00228024Brugia malayiFrom_analysisWormBase-Compara
WBGene00229149Brugia malayiFrom_analysisWormBase-Compara
WBGene00229715Brugia malayiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionIs predicted to encode a protein with the following domains: Leucine-rich repeat; Leucine-rich repeat domain superfamily; Leucine rich repeat; and Leucine-rich repeat, typical subtype. Is an ortholog of C. elegans lron-5.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSBm3281
Corresponding_transcriptBm3281.1
Other_sequenceHCC07413_1
HC05615
JI215722.1
JI176266.1
Experimental_infoExpression_clusterWBPaper00051007:upregulated_F120_vs_F30
WBPaper00061765:L3_vs_Adult_Downregulated
ReferenceWBPaper00045439
Remark[190208 pad] The CGC name Bma-lron-5 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Bma-lron-5 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene