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WormBase Tree Display for Gene: WBGene00228249

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Name Class

WBGene00228249SMapS_parentSequenceBm_v4_ChrX_scaffold_001
IdentityVersion8
NameCGC_nameBma-deg-1From_analysisInferred_from_orthology
Sequence_nameBm7988
Molecular_nameBm7988
Bm7988.1
BM41504
Other_nameBm-deg-1
TAG7988Curator_confirmedWBPerson4055
TAG1528
Bma-del-1From_analysisInferred_from_orthology
Public_nameBma-deg-1
SpeciesBrugia malayi
HistoryVersion_change110 Dec 2012 14:43:25WBPerson4055EventCreated
205 Jul 2013 11:43:21WBPerson4055Name_changeCGC_nameBma-deg-1
Other_nameBm-deg-1
302 Dec 2015 10:31:22WBPerson4055EventAcquires_mergeWBGene00221789
408 Feb 2019 15:42:28WBPerson1983Name_changeCGC_nameRemoved
508 May 2019 10:09:26WBPerson1983Name_changeCGC_nameBma-del-1
601 Oct 2019 10:47:49WBPerson1983Name_changeCGC_nameBma-deg-1
Other_nameBma-del-1
728 May 2021 19:05:20WBPerson1983Name_changeCGC_nameRemoved
828 Jul 2021 11:12:28WBPerson1983Name_changeCGC_nameBma-deg-1
Acquires_mergeWBGene00221789
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classdeg
RNASeq_FPKMWBls:00000973.64314From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.L3/L4.WBbt:0007833.SRP068692.SRX1539819
0.023371From_analysisRNASeq.brugia.WBls:0000097.control_median
0.046742From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505769
0.698743From_analysisRNASeq.brugia.WBls:0000097.control_mean
0.702786From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505171
0From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539876
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539886
RNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX2505170
3.44293From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000097.Unknown.WBbt:0007833.SRP068692.SRX1539817
WBls:00000781.31131From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539873
1.44117From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539874
1.74948From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX1539875
2.2048From_analysisRNASeq.brugia.WBls:0000078.control_mean
2.28924From_analysisRNASeq.brugia.WBls:0000078.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415911
2.54934From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415910
2.90419From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415908
3.18886From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000078.Unknown.WBbt:0007833.SRP068692.SRX2415909
WBls:00000800.666587From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539947
1.55413From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505770
1.57668From_analysisRNASeq.brugia.WBls:0000080.control_mean
1.74098From_analysisRNASeq.brugia.WBls:0000080.control_median
1.92783From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX2505771
2.15816From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000080.Unknown.WBbt:0007833.SRP068692.SRX1539949
WBls:0000081 (24)
WBls:00000823.45236From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026039
3.47576From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026033
3.55027From_analysisRNASeq.brugia.WBls:0000082.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000082.Female.WBbt:0007833.SRP068692.SRX1539869
3.82785From_analysisRNASeq.brugia.WBls:0000082.control_mean
3.88084From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.female.WBbt:0007833.SRP068692.SRX1539871
4.78004From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000082.Unknown.WBbt:0007833.ERP000948.ERX026041
WBls:0000083 (60)
WBls:00000920.464689From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539746
0.495205From_analysisRNASeq.brugia.WBls:0000092.control_mean
RNASeq.brugia.WBls:0000092.control_median
0.525722From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000092.Unknown.WBbt:0007833.SRP068692.SRX1539751
WBls:00000940.735265From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026034
0.763362From_analysisRNASeq.brugia.WBls:0000094.control_mean
RNASeq.brugia.WBls:0000094.control_median
0.791458From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000094.Male.WBbt:0007833.ERP000948.ERX026035
WBls:00001011.9304From_analysisRNASeq.brugia.total_over_all_stages.control_median
2.09636From_analysisRNASeq.brugia.total_over_all_stages.control_mean
WBls:00006621.05406From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026040
1.36957From_analysisRNASeq.brugia.WBls:0000662.control_mean
RNASeq.brugia.WBls:0000662.control_median
1.68507From_analysisRNASeq.brugia.WBStrain00041073.WBls:0000662.Unknown.WBbt:0007833.ERP000948.ERX026031
WBls:00006631.87924From_analysisRNASeq.brugia.WBls:0000663.control_mean
RNASeq.brugia.WBls:0000663.control_median
RNASeq.brugia.WBStrain00041073.WBls:0000663.Unknown.WBbt:0007833.ERP000948.ERX026038
GO_annotation00247033
00247034
00247035
00247036
00247037
Ortholog (30)
ParalogWBGene00222413Brugia malayiFrom_analysisWormBase-Compara
WBGene00222950Brugia malayiFrom_analysisWormBase-Compara
WBGene00224704Brugia malayiFrom_analysisWormBase-Compara
WBGene00225635Brugia malayiFrom_analysisWormBase-Compara
WBGene00226145Brugia malayiFrom_analysisWormBase-Compara
WBGene00226332Brugia malayiFrom_analysisWormBase-Compara
WBGene00226336Brugia malayiFrom_analysisWormBase-Compara
WBGene00234520Brugia malayiFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable sodium channel activity. Predicted to be involved in sodium ion transport. Predicted to be located in membrane. Is an ortholog of C. elegans deg-1. In C. elegans, deg-1 is involved in response to acidic pH and response to amino acid.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSBm7988
Corresponding_transcriptBm7988.1
Other_sequence (24)
Experimental_infoExpression_clusterWBPaper00061765:L3_vs_Adult_Downregulated
WBPaper00061765:L4_vs_Adult_Downregulated
WBPaper00061765:L4_vs_Micro_Downregulated
Remark[190208 pad] The CGC name Bma-deg-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
[210528 pad] The CGC name Bma-deg-1 was deleted as there was no evidence to support it.Curator_confirmedWBPerson1983
MethodGene