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WormBase Tree Display for Gene: WBGene00271709

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Name Class

WBGene00271709SMapS_parentSequencecb25.fpc4063
IdentityVersion1
NameSequence_nameCBG31038
Molecular_nameCBG31038
CBG31038.1
CBP48186
Public_nameCBG31038
SpeciesCaenorhabditis briggsae
HistoryVersion_change128 Apr 2017 01:00:14WBPerson4025EventSplit_fromWBGene00036833
Split_fromWBGene00036833
StatusLive
Gene_infoBiotypeSO:0001217
AlleleWBVar00022182
RNASeq_FPKMWBls:00000020.622487From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
1.9593From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
2.38865From_analysisRNASeq.briggsae.WBls:0000002.control_mean
4.58415From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
1.91116From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
1.93523From_analysisRNASeq.briggsae.WBls:0000002.control_median
2.26927From_analysisRNASeq.briggsae.WBls:0000002.control_mean
WBls:00000030.126279From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
0.252558From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
RNASeq.briggsae.WBls:0000003.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
0.084186From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:00000042.99075From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
4.10741From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
5.22407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
2.92852From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
3.46416From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
3.75835From_analysisRNASeq.briggsae.WBls:0000004.control_mean
4.18427From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:0000024 (12)
WBls:00000270.138151From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
3.25598From_analysisRNASeq.briggsae.WBls:0000027.control_mean
9.62979From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
0.755701From_analysisRNASeq.briggsae.WBls:0000027.control_median
1.37325From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
2.7853From_analysisRNASeq.briggsae.WBls:0000027.control_mean
WBls:00000351.38986From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:00000380.282945From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
1.78814From_analysisRNASeq.briggsae.WBls:0000038.control_median
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
2.55715From_analysisRNASeq.briggsae.WBls:0000038.control_mean
3.29333From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
6.65232From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:00000410.804821From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
0.812845From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
0.823498From_analysisRNASeq.briggsae.WBls:0000041.control_median
0.834152From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
0.932034From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.27632From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
1.05524From_analysisRNASeq.briggsae.WBls:0000041.control_median
1.33479From_analysisRNASeq.briggsae.WBls:0000041.control_mean
1.45676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
2.82387From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:00000630.548676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
1.15434From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.4284From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
1.79365From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
0From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
2.00095From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
1.10963From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
1.14688From_analysisRNASeq.briggsae.WBls:0000063.control_mean
1.26901From_analysisRNASeq.briggsae.WBls:0000063.control_median
WBls:00001011.38986From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.69438From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
1.44258From_analysisRNASeq.briggsae.total_over_all_stages.control_median
2.56286From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00280221
00280222
00280223
00280224
Ortholog (22)
Paralog (220)
Structured_descriptionAutomated_descriptionPredicted to enable DNA-binding transcription factor activity; sequence-specific DNA binding activity; and zinc ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Is an ortholog of C. elegans nhr-112; nhr-150; and nhr-271. In C. elegans, nhr-112 is involved in defense response to Gram-negative bacterium and innate immune response.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG31038
Corresponding_transcriptCBG31038.1
Other_sequenceCBC07088_1
Experimental_infoExpr_patternExpr1062405
Microarray_resultsGPL8303_CB6_WBGene00036833_A
GPL14143_CBG17072_741-800_0.761_35_B
GPL14143_CBG17072_784-843_0.937_1_C
GPL14143_CBG17072_942-1001_0.804_26_A
MethodGene