WormBase Tree Display for Gene: WBGene00280902
expand all nodes | collapse all nodes | view schema
| WBGene00280902 | SMap | S_parent | Sequence | PPA_ChrIV | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 6 | |||||||
| Name | CGC_name | Ppa-vha-5 | From_analysis | Inferred_from_orthology | |||||
| Sequence_name | PPA42533 | ||||||||
| Molecular_name | PPA42533 | ||||||||
| PPA42533.1 | |||||||||
| PP66404 | |||||||||
| Public_name | Ppa-vha-5 | ||||||||
| Species | Pristionchus pacificus | ||||||||
| History | Version_change | 1 | 24 Nov 2017 16:14:22 | WBPerson4055 | Event | Created | |||
| 2 | 20 Mar 2018 10:26:11 | WBPerson4025 | Name_change | CGC_name | Ppa-vha-5 | ||||
| 3 | 08 Feb 2019 15:42:29 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 4 | 08 May 2019 10:09:25 | WBPerson1983 | Name_change | CGC_name | Ppa-vha-5 | ||||
| 5 | 28 May 2021 19:05:21 | WBPerson1983 | Name_change | CGC_name | Removed | ||||
| 6 | 28 Jul 2021 11:12:28 | WBPerson1983 | Name_change | CGC_name | Ppa-vha-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vha | ||||||||
| RNASeq_FPKM | WBls:0000032 | 0 | From_analysis | RNASeq.pristionchus.WBls:0000032.control_mean | |||||
| RNASeq.pristionchus.WBls:0000032.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000032.Unknown.WBbt:0007833.SRP001700.SRX015659 | |||||||||
| WBls:0000101 | 1.30647 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_mean | ||||||
| 0 | From_analysis | RNASeq.pristionchus.total_over_all_stages.control_median | |||||||
| 3.91941 | From_analysis | RNASeq.pristionchus.WBls:0000101.control_mean | |||||||
| RNASeq.pristionchus.WBls:0000101.control_median | |||||||||
| RNASeq.pristionchus.WBStrain00042002.WBls:0000101.Unknown.WBbt:0007833.SRP001700.SRX015656 | |||||||||
| GO_annotation | 00286016 | ||||||||
| 00286017 | |||||||||
| 00286018 | |||||||||
| 00286019 | |||||||||
| Ortholog (33) | |||||||||
| Paralog | WBGene00098444 | Pristionchus pacificus | From_analysis | WormBase-Compara | |||||
| WBGene00104585 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00110806 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00117953 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| WBGene00205924 | Pristionchus pacificus | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable proton-transporting ATPase activity, rotational mechanism. Predicted to be involved in proton transmembrane transport. Predicted to be part of vacuolar proton-transporting V-type ATPase, V0 domain. Is an ortholog of C. elegans vha-5. In C. elegans, vha-5 is involved in several processes, including collagen and cuticulin-based cuticle development; exosomal secretion; and multicellular organismal-level water homeostasis. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | PPA42533 | |||||||
| Corresponding_transcript | PPA42533.1 | ||||||||
| Other_sequence (111) | |||||||||
| Experimental_info | Microarray_results | GPL14372_Probes_76314 | |||||||
| GPL14372_Probes_76315 | |||||||||
| GPL14372_Probes_76316 | |||||||||
| Remark | [190208 pad] The CGC name Ppa-vha-5 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | ||||||
| [210528 pad] The CGC name Ppa-vha-5 was deleted as there was no evidence to support it. | Curator_confirmed | WBPerson1983 | |||||||
| Method | Gene |
