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WormBase Tree Display for Expression_cluster: WBPaper00025141:unc-4::GFP_Enriched_Genes

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Name Class

WBPaper00025141:unc-4::GFP_Enriched_GenesDescriptionExpressed transcripts enriched in embryonic motor neurons (identified by unc-4::GFP expressing cells).
SpeciesCaenorhabditis elegans
AlgorithmComparisons of RMA normalized intensities for unc-4::GFP vs reference cells were statistically analyzed using Significance Analysis of Microarrays software (SAM, Stanford). A two-class unpaired analysis of the data was performed to identify genes that differ by 1.7-fold from the wildtype reference at a False Discovery Rate (FDR) of 1%. These genes were considered significantly enriched.
ReferenceWBPaper00025141
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Gene (991)
Attribute_ofMicroarray_experimentWBPaper00025040:DM39_unc-4::GFP_1
WBPaper00025040:DM51_unc-4::GFP_2
WBPaper00025040:DM59_unc-4::GFP_3
Associated_withLife_stageWBls:0000003
Anatomy_termWBbt:0004740Enriched
FACS
WBbt:0005278Enriched
FACS
WBbt:0005396Enriched
FACS
WBbt:0005656Enriched
FACS
Remarkunc-4::GFP is expressed in 13 embryonic motor neurons. (1) I5 (pharynx), (3) SAB (retrovesicular ganglion), and (9) DA (ventral nerve cord).
Intensity values were normalized using RMA (Robust Multi-Array Analysis) available through GeneTraffic (Iobion). Comparisons of RMA normalized intensities for unc-4::GFP vs reference cells were statistically analyzed using Significance Analysis of Microarrays software (SAM, Stanford). A two-class unpaired analysis of the data was performed to identify genes that differ by >= 1.7-fold from the wildtype reference at a False Discovery Rate (FDR) of <= 1%. These genes were considered significantly enriched.