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WormBase Tree Display for Microarray_experiment: WBPaper00036464:RN6390_8H_REP2

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Name Class

WBPaper00036464:RN6390_8H_REP2MicroarrayAffymetrix_C.elegans_Genome_Array
Expression_clusterWBPaper00036464:S.aureus-RN6390_regulated
SpeciesCaenorhabditis elegans
SampleMicroarray_sampleWBPaper00036464:RN6390_8H
ReferenceWBPaper00036464
RemarkAffymetrix .cel files were uploaded into the Resolver Gene Expression Data Analysis System, version 5.1 (Rosetta Inpharmatics) at the Harvard Center for Genomic Research for analysis. For each condition, three replicate microarrays were normalized and analyzed using the Resolver intensity error model for single color chips. The two conditions were then compared in Resolver to determine fold change for each probe set and a p-value, using a modified t test. Genes with a 2-fold or greater fold change and a p-value <0.01 were considered differentially expressed. Differentially expressed probe sets were compared for S. aureus infection. Value reported on GSE21819 was log2 RMA signal. Frequency values reported here are back-transformed to the linear scale, i.e. values are 2^VALUE.