WormBase Tree Display for Expression_cluster: WBPaper00039851:Live_C_albicans_vs_HK_OP50
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| WBPaper00039851:Live_C_albicans_vs_HK_OP50 | Description | Differentially expressed genes in the following exposure comparison:live C. albicans versus heat-killed E. coli. | |
|---|---|---|---|
| Species | Caenorhabditis elegans | ||
| Algorithm | Data were analyzed using Resolver Gene Expression Data Analysis System, version 5.1 (Rosetta Inpharmatics). Three biologic replicates per condition were normalized using the Resolver intensity error model for single color chips. Conditions were compared using Resolver to determine the fold change between conditions for each probe set and to generate a P value using a modified t-test. Probe sets were considered differentially expressed if the fold change was 2-fold or greater (P < 0.01). When comparing datasets, the overlap expected by chance alone was determined in 50 groups of randomly selected C. elegans genes using Regulatory Sequence Analysis Tools (http://rsat.ulb.ac.be/rsat/), a technique that has been used for similar analyses. P values were determined using chi-square tests. | ||
| Reference | WBPaper00039851 | ||
| Microarray_results (340) | |||
| Gene (309) | |||
| Attribute_of | Microarray_experiment | WBPaper00039851:C_albicans_alive_rep1 | |
| WBPaper00039851:C_albicans_alive_rep2 | |||
| WBPaper00039851:C_albicans_alive_rep3 | |||
| WBPaper00039851:Heat_Killed_C_albicans_rep1 | |||
| WBPaper00039851:Heat_Killed_C_albicans_rep2 | |||
| WBPaper00039851:Heat_Killed_C_albicans_rep3 | |||
| WBPaper00039851:Heat_Killed_E_coli_rep1 | |||
| WBPaper00039851:Heat_Killed_E_coli_rep2 | |||
| WBPaper00039851:Heat_Killed_E_coli_rep3 | |||
| Regulation | Regulated_by_treatment | Fungi infection: Candida albicans, live C. albicans versus heat-killed E. coli. | |
| Associated_with | Life_stage | WBls:0000041 | |
| Remark | Type: Fungi Infection |
