Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Microarray_experiment: WBPaper00040911:L4_ALG-2-TAG_control_IP

expand all nodes | collapse all nodes | view schema

Name Class

WBPaper00040911:L4_ALG-2-TAG_control_IPMicroarrayGPL9815
SpeciesCaenorhabditis elegans
SampleMicroarray_sampleWBPaper00040911:L4_ALG-2-TAG_control_IP
ReferenceWBPaper00040911
RemarkGEO record: GSM869847
Frequency = normalized median signal intensities. The median of four individual microarray spots was used for analysis. 200 units were substracted as a global background based on an estimate of background exactly as described in PMID: 15345052. Images were processed using GenePix Pro 6 Acquisition and Analysis Microarray Software. Spot intensity data was then analysed using R version 2.13.1 and Bioconductor 2.8 packages including limma and gplots for visualisation. Normalized spot intensities were used for all data analysis. For inter-array normalisation all data were scaled based on total array intensities. Data were filtered using a cut-off of 5 fold above background.