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WormBase Tree Display for Expression_cluster: WBPaper00049311:sAg-MNP_regulated

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Name Class

WBPaper00049311:sAg-MNP_regulatedDescriptionTranscripts that showed significantly altered expression after 48 hour exposure to sAg-MNP.
SpeciesCaenorhabditis elegans
AlgorithmData were screened for differences of each treatment (Ag-MNP, sAg-MNP, and AgNO3) from control using one-way ANOVA with contrasts. The false discovery rate (FDR) threshold was set at 0.2 and the fold change was required to be greater than 1.5, and a P-value <= 0.05. The FDR of 0.2 was selected to balance the protection against false positives while minimizing the rate of false negatives. Using Partek, genes that were significantly different from control in at least one treatment were then analyzed using agglomerative hierarchical cluster analysis (HCA). HCA is a 2-Pass clustering method; the first pass is a K-means clustering and in the second pass the K-means clusters are joined by agglomerative clustering.
ReferenceWBPaper00049311
Microarray_results172033_x_at
172137_s_at
172321_x_at
172323_x_at
172346_x_at
172360_x_at
172437_x_at
172439_x_at
172497_x_at
172503_x_at
172545_x_at
172547_x_at
172587_x_at
172735_x_at
172801_x_at
172802_x_at
173056_at
173083_s_at
173124_s_at
173235_at
173482_s_at
173632_s_at
173641_at
173659_s_at
173825_at
173992_at
174044_at
174071_at
174178_at
174254_at
174358_s_at
174563_at
174880_at
174960_at
175008_at
175393_at
175468_at
175504_at
175541_at
175597_at
175820_s_at
176261_s_at
176362_s_at
176581_at
176680_at
176681_at
176692_s_at
176732_at
176735_at
176786_at
176787_s_at
176905_at
176976_at
176986_s_at
177024_at
177489_at
177505_at
177801_at
177812_at
177851_at
177870_at
177942_at
178129_at
178507_at
178553_at
178666_at
178689_at
178715_at
179401_at
179469_s_at
179686_at
179787_at
179959_at
179983_at
180030_at
180032_at
180192_at
180261_s_at
180505_at
180540_at
180575_at
180908_s_at
180933_at
180979_at
181069_at
181136_s_at
181399_at
181410_s_at
181440_at
181714_at
181715_s_at
181722_s_at
182019_at
182143_s_at
182561_at
182868_at
182942_at
182966_at
182970_at
183086_at
183230_at
183237_s_at
183463_at
183577_at
183653_at
183717_at
183775_at
183895_at
184124_at
184162_at
184191_at
184205_at
184268_s_at
184378_at
184427_s_at
184711_at
184828_s_at
184829_at
185070_s_at
185334_s_at
185403_s_at
185643_s_at
185646_at
185717_s_at
185764_s_at
185775_at
185972_at
186127_at
186138_s_at
186362_s_at
186408_at
187144_at
187158_at
187278_at
187405_at
187428_at
187509_at
188028_at
188105_s_at
188116_at
188276_s_at
188364_s_at
188402_at
188404_at
188428_at
188438_s_at
188473_s_at
188531_s_at
188632_at
188705_s_at
188747_at
188781_at
188853_at
189086_s_at
189624_at
189629_at
189717_at
189797_s_at
190085_at
190374_at
190546_s_at
190585_at
191001_s_at
191198_at
191676_at
191688_at
191698_at
191988_s_at
192026_at
192967_at
193258_at
193272_s_at
193477_s_at
193593_s_at
194211_x_at
194238_x_at
171775_x_at
177660_at
185593_at
189469_at
190713_at
192968_s_at
173311_s_at
173572_s_at
174075_at
174351_at
174459_at
178591_at
180341_s_at
182395_at
183002_at
188250_at
188339_at
188763_at
188822_at
189419_at
189463_at
189476_s_at
192480_s_at
192755_s_at
193152_s_at
194163_s_at
174911_at
175083_s_at
176121_at
176209_at
177156_at
177681_s_at
179710_s_at
180707_at
185382_at
189660_at
189781_at
189858_at
190023_at
190025_at
190142_s_at
190581_at
190905_at
192725_at
AFFX-r2-11687-5M_s_at
Gene (207)
Attribute_ofMicroarray_experimentWBPaper00049311:Control_Rep1
WBPaper00049311:Control_Rep2
WBPaper00049311:Control_Rep3
WBPaper00049311:AgedParticles_Rep1
WBPaper00049311:AgedParticles_Rep2
WBPaper00049311:AgedParticles_Rep3
RegulationRegulated_by_moleculeWBMol:00005288
Associated_withLife_stageWBls:0000035