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WormBase Tree Display for Expression_cluster: WBPaper00053020:OrsayVirus-infection_downregulated

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Name Class

WBPaper00053020:OrsayVirus-infection_downregulatedDescriptionTranscripts that showed significantly decreased expression after infected by 20ul Orsay virus filtrate per 50-mm plate for 3 days starting from 16 hours after L4 larva stage.
SpeciesCaenorhabditis elegans
AlgorithmRNA-seq data were aligned to the C. elegans transcriptome WS190 using bowtie2. Counts were obtained from resulting BAM files using BEDTools, and these were used to generate normalized data tables using DESeq. A cutoff of mean 25 normalized reads (normalized according to DESeq negative binomial distribution) for at least one condition was used, and significantly altered genes were selected (DESeq Benjamini-Hochberg multiple-test correction q < 0.1).
ReferenceWBPaper00053020
Based_on_WB_Release190
GeneWBGene00018563log2 Fold change: -0.8379006183, p-value: 0.0004056227, ajusted p-value: 0.0701572514
WBGene00022103log2 Fold change: -1.0895896332, p-value: 3.85E-05, ajusted p-value: 0.00978975
WBGene00007248log2 Fold change: -0.7818013551, p-value: 0.000190429, ajusted p-value: 0.0381835445
WBGene00008605log2 Fold change: -0.8581150829, p-value: 0.0002458288, ajusted p-value: 0.0472032997
WBGene00019300log2 Fold change: -0.9824890872, p-value: 7.44E-05, ajusted p-value: 0.0166800984
WBGene00011844log2 Fold change: -0.9527550655, p-value: 6.09E-05, ajusted p-value: 0.014364609
WBGene00012032log2 Fold change: -0.9530661305, p-value: 5.39E-06, ajusted p-value: 0.0015764784
WBGene00018640log2 Fold change: -1.8743814727, p-value: 1.22E-08, ajusted p-value: 5.23E-06
WBGene00015544log2 Fold change: -0.9514783251, p-value: 5.43E-05, ajusted p-value: 0.01322446
WBGene00012814log2 Fold change: -1.232353279, p-value: 1.45E-05, ajusted p-value: 0.0040497105
WBGene00044644log2 Fold change: -1.1354778914, p-value: 8.17E-05, ajusted p-value: 0.0179730988
WBGene00007873log2 Fold change: -5.3433575514, p-value: 8.28E-68, ajusted p-value: 9.38E-64
WBGene00018237log2 Fold change: -0.6594779421, p-value: 0.0005538552, ajusted p-value: 0.0871475781
WBGene00006057log2 Fold change: -0.7685080042, p-value: 0.0004982919, ajusted p-value: 0.081225165
WBGene00009431log2 Fold change: -0.9014993682, p-value: 0.0002445062, ajusted p-value: 0.0472032997
WBGene00004210log2 Fold change: -0.7405768649, p-value: 0.0003223641, ajusted p-value: 0.0584330143
WBGene00019272log2 Fold change: -0.7737794541, p-value: 0.0006442504, ajusted p-value: 0.0985882829
WBGene00000251log2 Fold change: -0.9415647504, p-value: 1.45E-06, ajusted p-value: 0.0004630985
WBGene00001414log2 Fold change: -1.0373717946, p-value: 6.97E-05, ajusted p-value: 0.0159868748
WBGene00004235log2 Fold change: -0.7139062792, p-value: 0.0002175705, ajusted p-value: 0.0432430865
WBGene00018547
WBGene00008482log2 Fold change: -0.8895314488, p-value: 0.0003472137, ajusted p-value: 0.0614622533
WBGene00004122log2 Fold change: -0.824680649, p-value: 0.0006017837, ajusted p-value: 0.0927565714
WBGene00000497log2 Fold change: -0.9134532425, p-value: 4.76E-05, ajusted p-value: 0.0118633924
WBGene00017703log2 Fold change: -0.8315727, p-value: 0.0004133561, ajusted p-value: 0.0709531935
WBGene00017560log2 Fold change: -1.2711041523, p-value: 8.60E-05, ajusted p-value: 0.0187472902
WBGene00007938log2 Fold change: -1.3461391249, p-value: 1.16E-06, ajusted p-value: 0.0003850139
WBGene00003242log2 Fold change: -0.6978610016, p-value: 0.0004365862, ajusted p-value: 0.0738221599
log2 Fold change: -0.7202576515, p-value: 0.0003290762, ajusted p-value: 0.0587102968
WBGene00022033log2 Fold change: -0.8954935069, p-value: 6.15E-05, ajusted p-value: 0.014364609
WBGene00019756log2 Fold change: -1.31098685, p-value: 0.0002874118, ajusted p-value: 0.0529445285
WBGene00007872log2 Fold change: -4.9659963073, p-value: 2.43E-61, ajusted p-value: 1.83E-57
WBGene00006449log2 Fold change: -0.7783688145, p-value: 0.0003209442, ajusted p-value: 0.0584330143
WBGene00012901log2 Fold change: -0.7791967456, p-value: 0.0001025868, ajusted p-value: 0.0217234717
WBGene00004003log2 Fold change: -0.7885485097, p-value: 2.89E-05, ajusted p-value: 0.0075138216
WBGene00004120log2 Fold change: -0.8506987852, p-value: 0.0004207162, ajusted p-value: 0.0716735936
WBGene00010673log2 Fold change: -0.9370592671, p-value: 0.0006493835, ajusted p-value: 0.0985882829
WBGene00009094log2 Fold change: -0.9462711651, p-value: 0.0002243984, ajusted p-value: 0.0442123452
WBGene00018572log2 Fold change: -1.0871517589, p-value: 5.70E-07, ajusted p-value: 0.0002048686
log2 Fold change: -1.0933736998, p-value: 9.48E-08, ajusted p-value: 3.70E-05
WBGene00017937log2 Fold change: -1.1466034046, p-value: 2.00E-05, ajusted p-value: 0.0054678043
WBGene00001410log2 Fold change: -1.1506559528, p-value: 7.55E-05, ajusted p-value: 0.0167699296
WBGene00010573log2 Fold change: -1.1716420984, p-value: 5.81E-05, ajusted p-value: 0.0138476364
log2 Fold change: -1.1862384117, p-value: 2.17E-05, ajusted p-value: 0.0057806643
Attribute_ofRNASeq
RegulationRegulated_by_treatmentVirus infection: Orsay virus infection at 1-day post L4 adult hermaphrodite for three days.
Associated_withLife_stageWBls:0000067