WormBase Tree Display for RNAi: WBRNAi00077349
expand all nodes | collapse all nodes | view schema
WBRNAi00077349 | Homol | Homol_homol | R13H4:RNAi | ||
---|---|---|---|---|---|
Sequence_info | DNA_text | atgcctgcgaatggcaattctcatgcgtatttcaacatcgacgaagtgcgctcgaaaaatgttttgaaacaaattactcaattaatcaatgaagtgaccaacatcactgaaacgtttccgttaaaacctggacaaactactgaaggacttgtcgccactcttgatgctgccgttgctaattttcttcaaacgggaagctttgcaatttcgaaatgcccaattgcaaacagtgatccacgcgcaattgatttattgcacgaagctcttggagcagttcaagatactgggcaagtgatgattcaaactggaagagattttgtcagagattcaacttcaacaaacaaacgagctattgcaacgaattctggtagaaatttgttgactgtaagtttttaggtactcttttaactgaaaaatgttgtattcaggctgtcgctaaattcctaattcttgccgactcgattgatgtaaaagtgatagttgataaagtagatgaagttcgagaaactgcacaccaaatgattgaagcggatacaaaaatcaaagtagatgatttgtacaatcttctcatttctcaaatcgaagaacttgatatcactgttcgacgacgagccattgatttggttaaaccaaatcagagagatgatcttctagcagcaagatcagcacttcgacagactgcaccacttctgtatacttcaacacgaacatttgtaagacatccagaacatgaagaagctcgaagaaatcgtgattacactgcagatgaaatgcattctgctttaaatgctcttgaatctgttttaaacggacaacaaccgaaagtaacattttctgaatatggaagaataggcgatcttatcaatgaaatcgatacttttcaagtgagtttaaaaatttcaaataataagacaaataatttattttaagaatcgaatcgaaattgatccagcccattatcgtcgaggaactgatcgtccagatcttgaaggacattgtgaacgaattgttagtggttctgcttcaattgccgatgctgaaagcactcgtgaaaatcgaaaacaaaaaattgttgctgaatgcaataatttgcggcaagctcttcaagaacttttgaccgaatatgaaaaatctgtaagttttttctattgatctcttgacttgttgcctcgtttaaaataaaaagaaataaaaaacattcaaagaagcgcatctttttcacaaaagggcgatggagacggtgagaacaaacaaacaaacaatcgtgcgttctttcaagtgtgacgccttgtccctcagggcgagaacaactgtttttgtttgttaaccgaactcgaactaaagccgttttttagaaaaaaaaatgaccaccgcgagttcagacatggaaaatgttttttttagaatttcggggaaattctttaaaaaatttgtagtagtagaaaatatagagactacaaagtttttacaataaaatttaaagcttattacgacctgtttaactatgttttaaatctgtaatttttcagaccggccgaagagatgataatgatgatattcctcttggaatcgcagaagtacacaaaagaacaaaagatctccggcgacaccttcgtcgtgcaattgtagatcatataagtgatgctttcctggatacccgtacaccgcttattttactgatagaagctgctaaagaaggccatgaagagaatacaagatatcgttcaaagatgttccaagagcatgcaaatgaaattgtttcagttgctcgtctttcttgtcaactttcatcagatgttgaaagtgttagtgtcattcagcatacggctgctcaacttgaaaaacttgctccacaagttgctcaagctgccatcttactttgccatcaacctacttcaaaaactgctcaagagaacatggaaacctataaaaatgcttggtttgacaaagtgagattgttaacgactgctcttgacaatatcactactttggacgactttttggctgtcagtgaagcacatattgttgaagactgtgagcggggaatcaaaggtatcacggtaagtattttagttctcaaaattttaaatttaatgaaaattaacaaaaatagttttcgctaaattcgtcaacttttgagacgttcaaactgaattttccaggcaaacgcttcaacaccggatgaaaatgcggccaactgtgaaactgtcgactgtgctgccggatcgatacgtggacgagctctccgagtctgtgacgttgtcgatgctgaaatggacttccttcagaactctgaatacactgaaactgttaagcaagctgttcggattttgaaaactcaacgtgtagatcaattcgctgagcgtgcgagcgctttagccaaccgtcaagaagcacacggacttacatgggatccaaaaacaaaggaagaagaaatgaatgaatttatcaatgcttgtacattagttcacgatgcagttaaagacattcgacatgcacttttaatgaaccgaagtatgaatgatgttgattcggatgtagagtatgaagctgatggtgttggtgcagcaaatgcagatgctaatcgtacgatatccgaacaagaaaatcaacagaatctgatgagacgattgccagaagaagagaaaaagaaaattcaagcacaaattgatatcttcaaagtaacacaaacacgattcgaaagagaagttgccaagtgggatgaaacaggaaatgatattatatcattggccaataatatgtgtaagattatgatgagtatgacagaattcacaagaggttgtgggccattgaaaacgacaatggatgttatccgagcagcacaagaaatctcacttaatggatcaaaactaaatgcattggcacggcagattggagaagaaagtgctgattcgcagacgaaaaaggatttgctcgcatatttgtcacaaatcactctatattgtcagcaactgaatatttgtagtaaggtgagtttttttaattggtgccacgagctgtaaaagcgtaccaaatgtttttggtcaattgtttgtttcgggggttttttaaatttgtcaaattagtttttcaagaaaattgtaaagattcacaattaaaaacgcgtctataaaaactaaaactgaaaagaatctcgtatttttcagaattatctgaaaagtttttgaaaaaattgagaattaaaaaaaaaaacttatagatagtgtgatatttcaccaaaagaggtttcaactgtttttaacgatttcagtagagatataattttacttcgcgttttttttgcgaaccaagctctagactgaagccatgaaaaatgaaaaaaaaattgtgattggcctcacttatactagaaaattgttcatatacttactataaataagttttgtttaaattgctttcaaaaaaccatgtgaaatataactttaaacttttaatagaaagtaatatttcaggtgaaagctgatgtgactcaagttggaaatgagcttgtcgtatctgcacttgactctgcaatgtctcttattcaaacggctcgaaatcttttaactgctgttgtacagactgttaaagctgcatacattgccagtaccaaggttggttccctttctttaaacaaaacattaattattattcccacttgatgtctgatactattgctttccagcatttatcacacatttcttttttcgtacagacgataacggctgcttacgtaattcatttcaaatcagatggtatttcgcccactcttttgagtagacacgtggtttaaagtgccaatagaccagttgccttttgtacactgaattttgagattttagaaagtgtacccaaaagttttagaaaattaaataaataaaattaaaaaaaaaaaaaaacattctcaatagtgtgcacaacgcgaacgtgctcgagtcgaatcagccgttgcgcttagcgatgctcacaaagctattaattatgaaagtccgatggatgaatctggtgagaaaaaatgagaaagcattaaatatcgtgttgtgtggttttatcgatgttgtttttgagaaaaagagatattgagcatgtcgaatttaattttttgcttttttctcaaaatttacgttggctgctgcgtaatttaatggtaaatattttttatagttaaaaaaagcttatgtcttgagttcaaatcagtggttaagactattaatgtttgacgatttttttttaatggagtagggattttgctttaaaaaaatccagaatagtttgattctcagaaatacccaaaaaagagaaagaatgaaatgtcgaattttcgaaaatcagatttttcaatttttggcgattccctatttgaattctctcagtttggtgcgaattcaaacatggaatttagccaaaaattaaaagcaaaatctcagatttttatagatttcctgaatcctagaaaatacaaattaattttcattatattccaaaaaaaagaaaacaattccagttaaatatgttaattcaaattggtaaggacatccctttcttattttcccttcacacttaaaaatcgttttcccaacaaaaaaacatttaactttctaaaaatgcattgtatcggtcttgatgtgtggacatcgatcccccaatatgtcggtcttgtgatcttatactcccccgtaaaaaactcatacattttaaactagattgtattgcaactttaactaagaaaagaagattaagttgaaaaaaaaacttgaaagaaattgatacgaacgtaaaatatgtgttattgttgatgaaaagtgtctcgatgttgtttgctgttggtttcattttcttaaattgctcgaatgcttggaattctttgctgataacttcctgaaactcatccttattcttgcagttccgtcgtcctaatgccaacagtgtacgtgtcgagtggcgaatggctccaccaaagaaacaaccactaattcgaccacaaaagaataatgctataatcaggtaacgttttcatctattttttttgaatcaaggatccctctataagtgtttcctttgcctgcaaaaggacatatgacacacttcattgagaagccatgtgaaaaaaagtagtcggtccctgaataattcataaaaaatagcactgccaccagaaaatggcacgtagctgccattgtcagtagtcccaagtccctttttttgtggtaaaagtggtgaaagccgaaagagctgcgacaccaaaatgtatattcttgacttgttgagcaaaagtgtatcccttgaggatcataaatgcaaattgagttttcggaaagcaaaaaaaaagcgacaatgttcataaaaagtgatgaatagttggatgatttcggacattgaaatgaaagttttaaagcatcaaaaaacacaatttttcttttctttcagaaaattttccccccctgaaaaaatttttgataagatttcagacattttttaaacctattaaactaaattttacgattttgagatgcaccccgtaaatcgacacaagcgctacagtagtcattacaataattactgtagttttcgctacgagatattttgctcgtcaaaaatatgttgtgcaatacgcatactcagaagttggtgttcccgtgataggtgatcactaattcttgatcattatctattccattacagaaaattaattagaatccccctttcaaaagatgtattcaacgaacgccgactaatgttataaagagtttgcagacgggcatccgaacggcgacctttgcaaccagctaaagtgctcgccgagtttacgcgtaacgagattgagacgggtcgtgatagtgacgacgaggaacttgatcgccggcatcaacaaagaataaacggtcgtttatagataatttatttcagttttattcatgtatcttcatacttttcccttccaaatctttccacacatcctttatatgcccgagtctttattattttctcattctttcaattctcttcagctagaaatttgtatctgtgtattttttgtattcatttctgtttaatgctctaaattctatcagctcatcaccgccaccattatcaccgcatttttcatttttctcccccatgaatatcataatccatactgttgaaaatcaggtaactttacatctttacaatttattttcgcactatcaacctcaccctttcaacgattttttctgtatgattctgatttctaaactccctgatctatgtgcacaagtttttcaaattagatgaactcaattctttcct | |||
Experiment | Laboratory | SU | |||
Date | 30 May 2003 00:00:00 | ||||
Genotype | vab-9 | ||||
Delivered_by | Soaking | ||||
Inhibits | Predicted_gene | R13H4.4d | Inferred_automatically | RNAi_primary | |
R13H4.4b | Inferred_automatically | RNAi_primary | |||
R13H4.4a | Inferred_automatically | RNAi_primary | |||
R13H4.4c | Inferred_automatically | RNAi_primary | |||
R13H4.4f | Inferred_automatically | RNAi_primary | |||
R13H4.4e | Inferred_automatically | RNAi_primary | |||
Gene | WBGene00001978 | Inferred_automatically | RNAi_primary | ||
Transcript | R13H4.4e.1 | Inferred_automatically | RNAi_primary | ||
R13H4.4d.1 | Inferred_automatically | RNAi_primary | |||
R13H4.4a.1 | Inferred_automatically | RNAi_primary | |||
R13H4.4f.2 | Inferred_automatically | RNAi_primary | |||
R13H4.4b.1 | Inferred_automatically | RNAi_primary | |||
R13H4.4f.1 | Inferred_automatically | RNAi_primary | |||
R13H4.4c.1 | Inferred_automatically | RNAi_primary | |||
Species | Caenorhabditis elegans | ||||
Interaction | WBInteraction000009166 | ||||
Reference | WBPaper00005969 | ||||
Phenotype | WBPhenotype:0001566 | Remark | vab-9 mutant background enhanced the enclosure defects | ||
Penetrance | Range | 52 | |||
Remark | exact sequence used for RNAi not stated by authors, genomic sequence of gene used for curation | ||||
Method | RNAi |