WormBase Tree Display for RNAi: WBRNAi00088849

WBRNAi00088849 Homol: Homol_homol: R107:RNAi
  Sequence_info: DNA_text: ATGCGGATCCCTACGATTTGTTTTTTATTTCTTCTTATCTCGTTATCAAAATCGCTTCATATTGGCTCATGTCTTGGCTTAATATGTGGAAGAAATGGTCACTGCCATGCTGGACCTGTCAATGGAACTCAAACTTCTTATTGGTGCAGATGCGATGAAGGATTTGGTGGTGAATATTGTGAACAACAGTGTGATGTTTCAAAATGTGGAGCCGATGAGAAATGTGTTTTTGACAAAGATTATCGGATGGAGACCTGTGTCTGTAAAGATTGCGACATTAACGGAAACAGTCTACTAAAACCAAGCTGTCCATCCGGTTACGGAGGAGACGACTGTAAGACACAAGGATGGTGTTACCCGTCTGTCTGTATGAATGGTGGACAGTGTATTGGAGCTGGAAATCGAGCAAAATGTGCATGTCCAGATGGATTTAAGGGGGAGAGATGCGAACTTGATGTCAATGAATGTGAAGAGAACAAAAATGCATGTGGAAATAGGAGTACTTGTATGAATACGCTCGGTACATACATTTGCGTGTGTCCCCAAGGATTCCTTCCTCCGGATTGTCTAAAACCTGGGAACACATCGACCGTCGAATTCAAGCAACCAGTTTGTTTTCTAGAAATCTCAGCAGATCATCCAGATGGACGAAGTATGTACTGTCAAAATGGTGGATTTTGTGATAAGGCCTCGTCGAAATGCCAGTGTCCACCTGGATACCATGGAAGTACTTGTGAGTTGTTGGAGAAGGAAGATTCATGTGCATCAAATCCTTGTTCTCATGGAGTTTGTATTTCATTTTCTGGAGGATTTCAATGTATTTGTGATGATGGATATAGTGGATCTTATTGTCAAGAAGGAAAGGATAATTGTGTGAATAATAAATGCGAAGCTGGATCAAAATGTATCAATGGAGTGAATTCATATTTCTGTGATTGCCCACCAGAGAGAACCGGACCATATTGTGAAAAGATGGATTGTTCTGCAATTCCAGATATTTGCAATCATGGAACCTGCATTGATAGTCCTCTATCTGAAAAAGCTTTCGAGTGTCAATGTGAACCAGGTTATGAGGGAATTCTCTGTGAACAGGATAAAAACGAATGCCTTTCGGAAAACATGTGCCTGAATAATGGGACATGTGTCAATCTGCCAGGCTCATTTCGATGCGATTGTGCACGTGGATTCGGTGGGAAATGGTGTGACGAGCCATTGAATATGTGTCAAGATTTTCACTGTGAGAATGATGGAACTTGTATGCACACTTCTGATCACTCACCCGTATGTCAGTGTAAAAACGGATTTATTGGAAAACGATGTGAAAAGGAATGTCCAATCGGATTCGGAGGTGTTCGGTGTGATCTTCGATTGGAAATTGGAATATGCTCACGACAAGGTGGAAAGTGTTTCAATGGAGGAAAATGTCTTAGCGGATTCTGTGTTTGTCCACCTGATTTTACTGGAAATCAGTGTGAAGTCAACAGAAAAAATGGGAAAAGCTCGTTATCAGAGAACCTGTGTCTATCGGATCCATGTATGAACAATGCCACGTGTATCGATGTAGATGCCCATATTGGATATGCATGTATATGTAAACAAGGATTCGAAGGAGATATTTGTGAAAGACATAAAGATCTTTGTCTCGAGAATCCATGCTCCAATGGAGGAGTTTGCCATCAACATCGTGAGTCATTCTCATGCGATTGCCCGCCAGGGTTCTATGGAAATGGTTGTGAACAGGAAAAAATGTTCCGCTGTCTCAAGAGCACTTGCCAAAACGGAGGAGTTTGTATTAATGAAGAAGAGAAGGGAAGAAAATGTGAATGTTCATATGGATTTAGTGGAGCCAGGTGTGAAGAAAAAATCAATTTGACTGGGTTTACCGAGAAAGACAGCCTTCTGCGATCAGTTTGCGAGAAAAGAAAATGCTCCGAGAGAGCTAACGATGGAAACTGTGATGCTGACTGCAACTATGCTGCATGTAAATTCGACGGAGGTGACTGTTCAGGAAAACGGGAACCATTTTCCAAGTGTCGATATGGAAATATGTGTGCTGATTTTTTTGCAAATGGAGTTTGTAATCAAGCTTGTAACAATGAAGAATGTCTTTACGATGGAATGGATTGTTTACCTGCAGTTGTTAGATGTCCAGTTAAGATTCGAGAACATTGTGCTTCAAGATTTGCAAATGGAATCTGTGATCCAGAATGTAATACAAATGGATGTGGTTTTGATGGTGGTGATTGTGATAATGAAACGAATGCCACAATTATCACAAATATTCGAATCACAGTTCAAATGGATCCTAAAGAATTTCAAGTAACCGGAGGTCAATCACTTATGGAGATTAGTTCAGCTCTTCGTGTAACTGTCCGAATTCAAAGAGATGAAGAAGGACCTCTCGTGTTTCAATGGAATGGGGAATCTGAAATGGATCGAGTCAAAATGAATGAGAGACAGCTCACCGAGCAACATGTTCTTTCCACATCAATTTCCAGAAAAATCAAGAGAAGTGCAACGAATATTGGAGTTGTCGTCTATTTGGAAGTTCAAGAGAATTGTGATACAGGAAAATGTCTCTACAAGGATGCTCAAAGTGTTGTTGACTCAATATCTGCAAGGCTTGCAAAGAAGGGAATCGATTCTTTTGGTATTCCAATCTCAGAAGCTCTTGTCGCAGAGCCAAGAAAATCTGGAAACAATACAGGATTCTTATCATGGAATGCTCTTCTTCTAATTGGTGCTGGATGTCTGATTGTTATGGTTGTTCTGATGTTAGGAGCATTACCTGGAAATCGGACAAGGAAACGTCGAATGATCAACGCCTCTGTCTGGATGCCACCTATGGAGAATGAGGAGAAGAATCGGAAAAACCATCAATCAATAACTTCAAGTCAGCATTCACTTCTGGAAGCTTCTTATGATGGTTATATCAAAAGGCAAAGAAATGAACTGCAACACTATTCCTTGTATCCAAATCCTCAAGGATACGGGAATGGAAATGATTTCCTTGGTGATTTCAACCATACCAATCTTCAAATTCCAACTGAACCTGAACCTGAAAGCCCCATCAAACTACACACAGAAGCTGCAGGAAGCTATGCAATTACTGAGCCTATTACTAGGGAATCCGTGAATATTATTGATCCAAGGCACAATAGAACGGTTTTGCATTGGATTGCATCGAATTCCTCAGCCGAAAAGTCAGAAGATTTGATTGTACATGAAGCTAAAGAATGTATTGCGGCAGGAGCCGATGTGAATGCTATGGATTGCGACGAGAACACCCCATTGATGCTGGCTGTTCTTGCAAGAAGACGACGGCTTGTGGCTTATCTGATGAAAGCTGGAGCCGATCCAACCATCTACAATAAATCTGAACGAAGTGCTCTTCATCAAGCGGCTGCAAATCGAGATTTTGGAATGATGGTCTACATGTTGAATAGTACAAAATTGAAGGGAGATATCGAAGAACTTGATAGAAACGGAATGACAGCCCTGATGATTGTAGCACATAATGAGGGAAGAGATCAAGTTGCATCTGCAAAGTTACTCGTTGAAAAAGGAGCAAAAGTTGATTATGATGGAGCTGCGAGAAAAGATTCAGAAAAGTATAAAGGCAGAACGGCACTTCACTATGCTGCCCAAGTGAGTAATATGCCAATTGTGAAGTATTTGGTTGGAGAGAAAGGATCCAATAAGGATAAGCAAGATGAAGATGGAAAGACGCCGATTATGTTAGCTGCACAGGAAGGACGTATTGAAGTTGTGATGTATTTGATTCAGCAAGGGGCTAGTGT
  Experiment: Laboratory: HA
    Date: 06 Apr 2011 00:00:00
    Genotype: rtEx721[flp-18p::lin-12(RNAi) myo-2p::gfp]; glp-1(bn18)III
    Treatment: lin-12 Notch receptor was knocked down by RNAi using the flp-18 promoter (AIY, AVA, RIG, RIM, M2 and M3 neurons) in glp-1(bn18tslf) animals. Animals were shifted as eggs to 25 degrees Celsius, assayed as adults at 24 degrees Celsius.
    Delivered_by: Transgene_expression
  Inhibits: Predicted_gene: R107.8 Inferred_automatically: RNAi_primary
    Gene: WBGene00003001 Inferred_automatically: RNAi_primary
    Transcript: R107.8.1 Inferred_automatically: RNAi_primary
  Species: Caenorhabditis elegans
  Reference: WBPaper00038400
  Phenotype: WBPhenotype:0000412 Remark: [flp-18p::lin-12(RNAi)];glr-1(bn18) animals take more time to respond to octanol compared to wild type (N2) animals on control RNAi.
      Affected_by: Molecule: WBMol:00001966
      EQ_annotations: Life_stage: WBls:0000041 PATO:0000460
  Remark: lin-12 dsRNA expressed under the control of the flp-18 promoter in the AIY, AVA, RIG, RIM, M2, and M3 neurons; Authors report using a 3.8kb fragment of lin-12 cDNA containing the EGF repeats and LNR domain; first 3.8kb of the lin-12 open reading frame used for curation.
  Method: RNAi