WormBase Tree Display for RNAi: WBRNAi00101435
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WBRNAi00101435 | Homol | Homol_homol | CHROMOSOME_V:RNAi | ||
---|---|---|---|---|---|
W10C8:RNAi | |||||
CHROMOSOME_I:RNAi | |||||
Sequence_info | DNA_text | tatcatgtgtctgctgcataaccgtcggatcaatctgctcgtcttcctcctcctcaacatcagattccgaatccgacgcgttcgcatccagcggactcctgcctgccgacgaggacgccagtggtgatggaacgtgcgtcgatgctcccgtcgtcgatcctagacgcatttgcatcaacatcgtatgcatcattgctgcttgctgctgctgtgtggtcagtgcaattccagcgtttgcctttggtgatgggctctccgagctactgctatacgcaccacttgtacctcgtccatcctgactgtcagttatatcggaaccgcccgaacgatcagttgcgtactcgcacttcttcttccgcttgcagaatttacaccacatttctgtgttgttaactccgaatctggctcggcacttcttctgatcgttgttctccgatgctggaaaaaaaatttttaatttattttaaagctggtaaattctgagcatgcgtattgtacaacatatttgacgcgaaaaatataaaaatatctcgtaacgaaaactacagtaattattaaaatgactaccgtagcgctgttaatttttccttccgctacagtagacatttatggggttattcatgtgatgtagaaaaatgaaaaaaacgcatccaatttttttgcatttgtggaaattttagaacatttttatgcatttttcgacattttttggaatttttcgacattttttggaatttttcggaatttttctacatttttgtgcattttttttttacattttttacacatttttagacatttttcgaaattttttgacatttttctgcatttttcgacagttcacttcacaagctgaaggcgaaaaaaatgccaaaaaaaatgccaaaaaatgcaaaaaaatgattgcatttttgtgcattttttctcatttttcaacattttttgtgcatttttctgcatttttcgattttttttttgcagttttcgacattggctgacagctcacttagcaagcggaaggcgaaaaaaatgccagaaaaatgtcaaaaaaatgcaaaaaatgattgcattttcccttttttttcaaaatttcctgcaaaattggaggttttagctaaaatttttgaaccggaaatttaccgaaaatttcagaatagcgaaattcgctttttttgggatattttttgaggcctaaacctcaaattttctgaaaaaaaaaatttcattgcggttcaaaatttccaacaaaaatggcataatgttagcggaaatctcaattcttggcagttttcccaggaaagttaggcaattttttttttttgaaaaattctcaaaattttgatcctaaaccgtaaaatttccgaaaaaaaaactcacgaatactcttatcccttcgtttcttcgtctttttcttattaaccgcataattttcccgcgccgaccactccggataccgttccttgtgtgtttccttatccttctttgccatttcaaaatatttcgcctgttcttccttcgacaaatcatgccacctctttccaagctctttattcaactctgcactctgtttctcattatttccaatctcttccagcagtgcttttcgattttccttcataaaccacatgaacgcgtttaatggcttcttcacatgatcatccttcttcgcttttccacctccttgagcccttcgatcgacattctgtggagccattgatgatggatgcatgtatggtggcattcccatctgattcattggatgaccggctcgcatgttcagtggagccatattctcaaagtgttgtttggcggctgccgcagcgattgctgctccatagacaggacttggcgggaacattggaaatgtggggctcattgctcccattggaaacatcaggcttggtgatcgtagtgctgctgcgtatggattctgaaaaaaaaatcgatttcaattttttcaaaaaactaaaaatcgaaaattttttgtttttcaattttccgatatttcgaacattttttttcgatttctcaaaaattagtttatcaatttaaatattttttctcatcaatttaaacaaaagtagatcgattttaaatttaaaaaaagctatttttaaaaattctaaaatgttcgttttaacgacacccttcatacgggtgtcggttttcccatttttcaaaaaaaaaatcgaaaacatttttttctttttttaaaatcaaattttccagaaaacatttctaaaaaaagtgcaaaaaagcaaatttcccactaatttttaacccaaaaaaatttttgtagcactctctctaactccctgagcggctggccccacctgtcctacagtacccccgagaagtttcttctcggaaactgttgtactgctctgctcaatatcctccaatcggcggccgctcgttaacaatatttgttttgcaagtctcgttcgcagctcattagagtatctgtgttatcactagttgctcacagagcacaaaacagtcacttgagatgtggaggggcttaagtcgaaatggaatagatacggatcagattttccgattgttgcctcaaagttttttttcaaatttatttatatataaatatttgtactctctgagagcaactttacattcaattgaaagtttcaaaaactcgaattattcgaaaatacctaaaagtaaaacggtaattggtctcaaagcgaccgactttttgaatctcaaaagaccgtgtgcccttaaggagtactgtagttttcaagatttgccgcacagctctgaaaggtacggtagtcattcagtttccacgaaatctactaaagagttcgaattcgtcagtgaaaactcaaatgtttgagtagattggtgtatttagtcacttgtctacagtacccctaacgagaaggagttgaaaaaaatgtagaggggataaaatatggcaattttcgcgccaaaactacagtacccgatctcgaagcgaagttaaattcaaacaaacttgcgcgcctttaagaagtactgtagttcctttagtttttgctacaaaaaccgaatggaaaatcgttcctaatttttcagaaaaccttggctcaacctgtgcatgtggtgtcaggctgccccttcacggtttgatctacaaaaaatgcgggaatttttcacccaaaaatatgtgacgtcaacaggttcttaaccatgcgaaatcagttgagagctctgcgtctcttctcccgcctattttgtagatctacgtagatcaagtcgaaatgagacactttgacaccacgtgtctgtgtacagtaccccgagaagataggcctagtaggtaggtacggtaatcattcagatccccgctagctctcaacaaattcaaaaaacaagtgtcaattctctacaggaagtggcaccaatcatgttccggaagcaattagagctctctcacacttgttctggtgtggggtcatcatcattttgtaatgaatgaatacgaacacacacacaccttttgaacctattgttttccgcgtctttttgtctgtagaaaaaaggtgtccaaacatgtgtgtgtggggggggggggggcccagaggtgtctaattgtctattgtatccgtgtctcgggtaccagcaaccataattaccaccaccatcgagaccccccaaagtgacgcaaaaggaaataatttcggctcttgacatgatgttcaacaattcaaaagaaatttttggtgttttttcgccaatagtttttcgagaaaaacaaattgccaaaaaacacgcaattttttgggagttaatgaggcttctccaacaaaaaagaagaaaaaactgttttcgaggaaatgcaacgagtttttggattcagaagataatagattcagtttttcggtgaaaattttgtagaatttctcacgaatttttggcttccctcataaaatgaaatggaagagtttttgccgaactaggtcattttggctcagtagatttacggcgcgttgcgtgtcgcgtcgcggctcgattttagttgtaaaactaaatgcacttgtccgtgtggagtacacgactatcccagtccggcgggcgattgtcaatggagcgcgaaaaattcaatgaggaaggccagaaccccatggcggaaagccaagaatttttggatttggaagacaataaattcagttttttagtggaaattttgtattatttctgctttttggggaagaaaattgtaggaagaataaaaaattaatacggttttttttctacaaaaatggagaaaagccctaaaaattcttgaaattgggtaaaaatttgaattttttttttttggaatttctgcttttttggggaagaaattgttggaaaaatgatttttaataggattttaaagcaattttttgcaaatttcgacgatttttgattcaaattgaagaataagctcaaaaatacacaattttccatatttttcaataaagctttcgattttagggtgttttttcgctttttttaaataatttttggtgtaaattcttaaattccaaaaatatagaggctctcgaaccctttaaaaattcaaaatacataatttttcccatttcttaggcaatttctgggcaaaatattgaaattgcaacttttaaaagtatttctaatgcctagactacataatttttctaataaaatagggggaattgtcataaaaaggattttaaagcgatttttcgtcgatttttgggggaaatcttgaaatttcaactttataaggtatttataacatattcgaggcctaatattcacctttgttttcagatttttcagtgaaaacttccaattaaagccgattttttgccaatttcggtaatttttcgttcagaagtatttaacttgttaactctaaaatacaattttaagtcgatttttgtcgattttcgccaatttttatgtgttttaattcaaattttttcaattttccaagtaaaaaatcaccataaatagaggcataaacatgggtaaagcagctgccgagtatccaggactgaagtgtgacattaaaccgggaaacgatggtgacattggttcgacttttggaaatgcactttttaacactgaaaatttgataattattcggttagaatggttaaaaaagagccaaatttttgattttcaaccgattttttggcaaatttcacaatttttagtcaaaattctttaaaatccaattttatagggttaaagatttcatttttccagattttttcatgaaaactccgattttaaagagatttttcggtaattttcacaatttttagttaaaattcttcaaaactcaattttatagggttaattatctcatttttccttcaaaatttcgatttttgaaagcgatttttcgcaaattttcacaattttcagttaaaaatattttaaaattcaacttttatagtgatatccgagttcaaaacctctcattttttagatttttcaattgaaaattcgattttaaagcgatttttcgtaaaattttaaaaggaatttctagcacctctaaaggcctgaaatacataattttttagatttttccattcacagatctcaaaaaaggtcaatttttggcgccaagttcaaatttctcagatcaattttgaatattatccaattcttaatcctttcgcacccctatacagtctattgagcacacacagacggaccaacttgttcaagtactcacgacggattagcacacaagataacggaccgagatagtatgggattcggagagacgcagatggtgttcgaacaccgttgcgtaacatccttttacgtcattatgtcattgcgtaaggcccgggaccatcaggtcaattcttaggggtgttttgaaattagcatggatttttttaatagaaaatagtgaaaaccggaaaaaaaattggttaaaaatgagtaaatttcatttataaagtgttagaaatactttaaaatataaaaaatggcgaaaaatcgctttaaaattggttgaaattcaaaataacactgaaaatactcaaatttgtcaaaaaaaaatattttagcgatttttaattaatttaaattcccgcgcttttgtctcgattttgaactccgcccataaaaccgtgccgcacttttgcactttttaatttcaacgtaaagtccaatttttgggttgtttttctagcttttaatgaatttttcggcgatttttaaaacctttttctccatttaaaaactgaaaaaaaacccccaaaatatggatttacgctgaatttgaaaaaaaaacaaagtgcggcacggttctatgggcggagtttagacaaaaaatgcgggaatttaaataaggtttttttttcaaatttaatgatttttttctctttttttgggatcagtcttagcatttaaagtttttatttaaattatttaaatttaaatttatatgtatttttttaatatttaatgtccctttttcctgcagaaatttagaaatttagaagaattttcaaatattttttttgtgtaataaagtcgaaaggcaattgaggtggtccataaaattttgtgtgatagctggccaccttcccctttcgatcaaatttattggaaaactcaccatcaatcgatggatttcgaccggcaccgtctaattctgcttccattacagcttcttttttatcatcggctaactgttgttctgacgtttcaccactaatcattggatcatcgtcagcatcctcatcccgacggaacaccttcacctcatcgccgagctcttcgtcggccatcatttttgt | |||
Experiment | Laboratory | JK | |||
Date | 23 Oct 2001 00:00:00 | ||||
Genotype | rde-1(ne219)/+; qIs56 [lag-2::GFP] (marker for the distal tip cell) | ||||
Treatment | To circumvent pop-1 maternal effect lethality, double stranded pop-1 RNA was injected into a hermaphrodite worm homozygous for rde-1(ne219) (defective for RNAi). Injected animals were then mated with wild-type males to generate rde-1/+ cross-progeny, which are zygotically sensitive to RNAi. dsRNA was injected into unc-32; rde-1 animals at both 2.5 and 1 mg/ml. Injected animals were crossed with N2 males or males carrying GFP reporters. | ||||
Delivered_by | Injection | ||||
Inhibits | Predicted_gene | W10C8.2 | Inferred_automatically | RNAi_primary | |
Gene | WBGene00004077 | Inferred_automatically | RNAi_primary | ||
WBGene00220126 | Inferred_automatically | RNAi_primary | |||
Transcript | W10C8.2.1 | Inferred_automatically | RNAi_primary | ||
W10C8.17 | Inferred_automatically | RNAi_primary | |||
Species | Caenorhabditis elegans | ||||
Reference | WBPaper00005116 | ||||
Phenotype | WBPhenotype:0000691 | Remark | pop-1(RNAi) animals have no gonadal elongation and no bright lag-2::GFP expression in the gonad (unlike wild type). Somatic gonadal cells are aberrantly arranged around the gonadal periphery. | ||
WBPhenotype:0001278 | Remark | pop-1(RNAi) animals have no gonadal elongation and no bright lag-2::GFP expression in the gonad (unlike wild type). Somatic gonadal cells are aberrantly arranged around the gonadal periphery. | |||
WBPhenotype:0001355 | Remark | pop-1(RNAi) animals have no gonadal elongation and no bright lag-2::GFP expression in the gonad (unlike wild type). Somatic gonadal cells are aberrantly arranged around the gonadal periphery. | |||
Remark | (Figure 3C) zygotic pop-1 RNAi (see treatment details). Authors report using genomic sequence of gene as template DNA for dsRNA sequence. Entire genomic sequence used for curation. | ||||
Method | RNAi |