WormBase Tree Display for Sequence: Y111B2A
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Y111B2A | DNA | Y111B2A | 257705 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (36) | ||||
CDS_child (1090) | ||||||
Transcript (73) | ||||||
Pseudogene | Y111B2A.25 | 35398 | 43959 | |||
Y111B2A.25:wp118 | 35398 | 43944 | ||||
Y111B2A.27 | 39402 | 37483 | ||||
Transposon | WBTransposon00000192 | 26762 | 25517 | |||
Genomic_non_canonical | WRM0620aE12 | 35561 | 67506 | |||
Nongenomic | yk206a4 | 54323 | 54681 | |||
yk217g6 | 149327 | 152266 | ||||
yk241h4 | 116428 | 116942 | ||||
yk279b12 | 54319 | 54617 | ||||
yk363g6 | 159522 | 163673 | ||||
yk377h4 | 106814 | 109618 | ||||
PCR_product (142) | ||||||
Allele (6466) | ||||||
Oligo_set (24) | ||||||
Feature_object (1945) | ||||||
Feature_data | Y111B2A:Polysome | 1 | 257705 | |||
Y111B2A:TranscriptionallyActiveRegion | 1 | 257705 | ||||
Y111B2A:ChIPSeqTF | 1 | 257705 | ||||
Y111B2A:TRF | 1 | 257705 | ||||
Y111B2A:Dust | 1 | 257705 | ||||
Y111B2A:inverted | 1 | 257705 | ||||
Homol_data (22) | ||||||
Structure | From | Source | CHROMOSOME_III | |||
Overlap_right | ZC482 | 257600 | ||||
Overlap_left | Y49E10 | |||||
Clone_left_end | Y111B2A | 1 | ||||
Clone_right_end | Y49E10 | 105 | ||||
Y111B2A | 257705 | |||||
DB_info | Database | EMBL | NDB_AC | AL132904 | ||
NDB_SV | AL132904.6 | |||||
Secondary_accession | AL132886 | |||||
AL132885 | ||||||
AL132945 | ||||||
AL132908 | ||||||
AL132906 | ||||||
AL132890 | ||||||
AL132889 | ||||||
DB_remark | [060419 pad] Clone sequence corrected in line with multiple Transcript reads from a variety of sources. 2 single bp insertions at 230446 and 230465. | |||||
[121025] Sequence correction: SNP 0 bases @ 80493 | ||||||
[121025] Sequence correction: SNP 0 bases @ 90355 | ||||||
[121025] Sequence correction: SNP 0 bases @ 190678 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Sulston JE | ||||
From_laboratory | HX | |||||
Date_directory | 060419 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | Y111B2A | ||||
Remark | Transposon Y111B2A.6 converted into an S_Child [020208 kj] | |||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | a9639be0f45ea364b69dd2446739a185 | ||||
Status | Finished | 24 Jul 2000 00:00:00 | ||||
Submitted | 02 Apr 2001 00:00:00 | |||||
Annotated | 06 Aug 2001 00:00:00 | |||||
Map | Sequence-III | Ends | Left | 6474 | ||
Right | 6508 | |||||
Interpolated_map_position | III | 18.0226 | ||||
Assembly_tags | Finished Left | 1 | 6 | Y111B2A | ||
annotation | 228063 | 228045 | First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by repH sequence | |||
1043 | 1087 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - SIL of sp27c12 | ||||
14404 | 14491 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primers only here | ||||
70450 | 70485 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - single direction primers in inverted repeat | ||||
110255 | 110545 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - this region contains reads from SIL of sp15g11 | ||||
110727 | 110852 | First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join made using repK data | ||||
110728 | 110853 | First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join made using repK data | ||||
117271 | 117433 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primer only over inverted repeat | ||||
117275 | 117275 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primers only here, unable to sequence terminators. | ||||
117638 | 117697 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - single direction primers only here | ||||
178263 | 178307 | First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by inv. rpt | ||||
186029 | 187279 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Repeat contains 156bp single clone region. so95e8 SIL confirms join but does not cover the single clone region. Edited to the remainder of the repeat. | ||||
223406 | 223443 | First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - area contained within IR-2 rpt, bridged by so82b5 and sp12c12 | ||||
223456 | 223488 | First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - area contained within IR-2 rpt, bridged by so82b5 and sp12c12 | ||||
240295 | 240303 | First select a Feature - [ ] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - join confirmed by repJ | ||||
Finished Right | 257700 | 257705 | Y111B2A | |||
Method | Genomic_canonical |