WormBase Tree Display for CDS: Y47D3A.29
expand all nodes | collapse all nodes | view schema
| Y47D3A.29 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | Y47D3A | |||
| Structure | Source_exons | 1 | 144 | |||
| 192 | 285 | |||||
| 337 | 2681 | |||||
| 3532 | 4118 | |||||
| 5494 | 5837 | |||||
| 6888 | 7072 | |||||
| 7127 | 7216 | |||||
| 9361 | 9509 | |||||
| 10142 | 10341 | |||||
| 11349 | 11497 | |||||
| DB_info | Database | KEGG | KEGG_id | 2.7.7.7 | ||
| TrEMBL | UniProtAcc | Q9NAH1 | ||||
| UniProt | UniProtAcc | Q9NAH1 | ||||
| AlphaFold | entry | Q9NAH1 | ||||
| NCBI_protein | GI_number | GI:25005148 | ||||
| Protein_id | CHROMOSOME_III | CAB97239 | 2 | |||
| DB_remark | POLA-1 protein; contains similarity to Pfam domains PF00136 (DNA polymerase family B), PF03104 (DNA polymerase family B, exonuclease domain), PF08996 (DNA Polymerase alpha zinc finger), PF12254 (DNA polymerase alpha subunit p180 N terminal); contains similarity to Interpro domains IPR042087 (DNA polymerase family B, thumb domain), IPR043502 (DNA/RNA polymerase superfamily), IPR006133 (DNA-directed DNA polymerase, family B, exonuclease domain), IPR015088 (Zinc finger, DNA-directed DNA polymerase, family B, alpha), IPR012337 (Ribonuclease H-like superfamily), IPR036397 (Ribonuclease H superfamily), IPR024647 (DNA polymerase alpha catalytic subunit, N-terminal domain), IPR006172 (DNA-directed DNA polymerase, family B), IPR006134 (DNA-directed DNA polymerase, family B, multifunctional domain), IPR023211 (DNA polymerase, palm domain superfamily), IPR038256 (DNA polymerase alpha, zinc finger domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00012936 | ||||
| Corresponding_transcript | Y47D3A.29.1 | |||||
| Corresponding_protein | CE32262 | |||||
| Corresponding_PCR_product | cenix:333-d7 | |||||
| sjj_Y47D3A.c | ||||||
| sjj_Y47D3A.d | ||||||
| Corresponding_oligo_set (20) | ||||||
| Matching_cDNA (59) | ||||||
| RNAi_result | WBRNAi00075442 | |||||
| WBRNAi00026719 | ||||||
| WBRNAi00009341 | ||||||
| WBRNAi00056755 | ||||||
| WBRNAi00026720 | ||||||
| WBRNAi00097143 | ||||||
| WBRNAi00114561 | ||||||
| WBRNAi00009342 | ||||||
| Microarray_results (22) | ||||||
| Brief_identification | DNA polymerase | Accession_evidence | UniProt | TR:Q9NAH1 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 07 Dec 2020 17:28:32 | WBPerson51134 | ||||
| Remark | [021029 ar2] Slightly reduced final exon based on EST yk792a07.3 | Curator_confirmed | WBPerson1847 | |||
| [201207 skd] Converted to main CDS, isoform tag removed. Based on SL1 and RNASeq_splice_high_qual evidence. | Curator_confirmed | WBPerson51134 | ||||
| Feature_evidence | WBsf126803 | |||||
| From_analysis | RNASeq_splice | |||||
| Associated_feature | WBsf127747 | |||||
| Method | curated |
