WormBase Tree Display for CDS: Y47D3B.10
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Y47D3B.10 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | CHROMOSOME_III | |||
Structure | Source_exons | 1 | 264 | |||
1843 | 2065 | |||||
2111 | 2238 | |||||
2926 | 3010 | |||||
3075 | 3721 | |||||
4455 | 4619 | |||||
4768 | 4935 | |||||
DB_info | Database | KEGG | KEGG_id | 1.14.11.2 | ||
SwissProt | UniProtAcc | Q10576 | ||||
UniProt | UniProtAcc | Q10576 | ||||
UniProt_GCRP | UniProtAcc | Q10576 | ||||
AlphaFold | entry | Q10576 | ||||
NCBI_protein | GI_number | GI:3881011 | ||||
Protein_id | CHROMOSOME_III | CAA21045 | 1 | |||
DB_remark | DPY-18 protein; contains similarity to Pfam domains PF08336 (Prolyl 4-Hydroxylase alpha-subunit, N-terminal region), PF13640 (2OG-Fe(II) oxygenase superfamily); contains similarity to Interpro domains IPR006620 (Prolyl 4-hydroxylase, alpha subunit), IPR045054 (Prolyl 4-hydroxylase), IPR044862 (Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR013547 (Prolyl 4-hydroxylase alpha-subunit, N-terminal) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Visible | Gene | WBGene00001077 | ||||
Corresponding_transcript | Y47D3B.10.1 | |||||
Corresponding_protein | CE20261 | |||||
Corresponding_PCR_product | cenix:321-g9 | |||||
cenix:321-g9_1 | ||||||
mv_AAA62207 | ||||||
sjj_T28D6.1 | ||||||
sjj_T28D6.1_1 | ||||||
sjj_Y47D3B.10 | ||||||
Corresponding_oligo_set (14) | ||||||
Matching_cDNA (101) | ||||||
RNAi_result | WBRNAi00056767 | |||||
WBRNAi00115627 | ||||||
WBRNAi00027622 | ||||||
WBRNAi00026722 | ||||||
WBRNAi00094817 | ||||||
WBRNAi00065822 | ||||||
WBRNAi00094816 | ||||||
WBRNAi00009344 | ||||||
WBRNAi00019394 | ||||||
Microarray_results (17) | ||||||
Brief_identification | Prolyl 4-hydroxylase subunit alpha-1 | Accession_evidence | UniProt | SP:Q10576 | ||
RNASeq_FPKM (74) | ||||||
Remark | Annotation based on homology to SwissProt Q10576 (BLASTP score 1533) | |||||
Associated_feature | WBsf015970 | |||||
Method | curated |