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WormBase Tree Display for CDS: Y47D3B.10

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Name Class

Y47D3B.10EvidenceInferred_automaticallymake_isoforms.pl
SMapS_parentSequenceCHROMOSOME_III
StructureSource_exons1264
18432065
21112238
29263010
30753721
44554619
47684935
DB_infoDatabaseKEGGKEGG_id1.14.11.2
SwissProtUniProtAccQ10576
UniProtUniProtAccQ10576
UniProt_GCRPUniProtAccQ10576
AlphaFoldentryQ10576
NCBI_proteinGI_numberGI:3881011
Protein_idCHROMOSOME_IIICAA210451
DB_remarkDPY-18 protein; contains similarity to Pfam domains PF08336 (Prolyl 4-Hydroxylase alpha-subunit, N-terminal region), PF13640 (2OG-Fe(II) oxygenase superfamily); contains similarity to Interpro domains IPR006620 (Prolyl 4-hydroxylase, alpha subunit), IPR045054 (Prolyl 4-hydroxylase), IPR044862 (Prolyl 4-hydroxylase alpha subunit, Fe(2+) 2OG dioxygenase domain), IPR011990 (Tetratricopeptide-like helical domain superfamily), IPR013547 (Prolyl 4-hydroxylase alpha-subunit, N-terminal)
OriginFrom_laboratoryHX
SpeciesCaenorhabditis elegans
PropertiesCodingCDS
Prediction_statusConfirmed
VisibleGeneWBGene00001077
Corresponding_transcriptY47D3B.10.1
Corresponding_proteinCE20261
Corresponding_PCR_productcenix:321-g9
cenix:321-g9_1
mv_AAA62207
sjj_T28D6.1
sjj_T28D6.1_1
sjj_Y47D3B.10
Corresponding_oligo_set (14)
Matching_cDNA (101)
RNAi_resultWBRNAi00056767
WBRNAi00115627
WBRNAi00027622
WBRNAi00026722
WBRNAi00094817
WBRNAi00065822
WBRNAi00094816
WBRNAi00009344
WBRNAi00019394
Microarray_results (17)
Brief_identificationProlyl 4-hydroxylase subunit alpha-1Accession_evidenceUniProtSP:Q10576
RNASeq_FPKM (74)
RemarkAnnotation based on homology to SwissProt Q10576 (BLASTP score 1533)
Associated_featureWBsf015970
Methodcurated