WormBase Tree Display for CDS: Y54G2A.39a
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| Y54G2A.39a | SMap | S_parent | Sequence | Y54G2A | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 92 | |||
| 377 | 501 | |||||
| 1136 | 1455 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | Q60F71 | ||
| UniProt | UniProtAcc | Q60F71 | ||||
| AlphaFold | entry | Q60F71 | ||||
| NCBI_protein | GI_number | GI:351051359 | ||||
| Protein_id | CHROMOSOME_IV | CCD83527 | 1 | |||
| DB_remark | CLEC-80 protein; contains similarity to Pfam domain PF00059 (Lectin C-type domain); contains similarity to Interpro domains IPR016186 (C-type lectin-like/link domain superfamily), IPR001304 (C-type lectin-like), IPR016187 (C-type lectin fold) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Visible | Gene | WBGene00043062 | ||||
| Corresponding_transcript | Y54G2A.39a.1 | |||||
| Corresponding_protein | CE37574 | |||||
| Corresponding_oligo_set | GPL14144_Y54G2A.39_242-301_0.948_4_B | |||||
| GPL14144_Y54G2A.39_341-400_0.949_3_C | ||||||
| GPL14144_Y54G2A.39_380-439_0.958_1_A | ||||||
| GPL8304_CE_WBGene00043062_A | ||||||
| GPL8304_CE_WBGene00043062_B | ||||||
| GPL8673_Y54G2A_39P00031 | ||||||
| GPL8673_Y54G2A_39P00435 | ||||||
| GPL8673_Y54G2A_39P00462 | ||||||
| Matching_cDNA (18) | ||||||
| Microarray_results | GPL14144_Y54G2A.39_242-301_0.948_4_B | |||||
| GPL14144_Y54G2A.39_341-400_0.949_3_C | ||||||
| GPL14144_Y54G2A.39_380-439_0.958_1_A | ||||||
| GPL8304_CE_WBGene00043062_A | ||||||
| GPL8304_CE_WBGene00043062_B | ||||||
| GPL8673_Y54G2A_39P00031 | ||||||
| GPL8673_Y54G2A_39P00435 | ||||||
| GPL8673_Y54G2A_39P00462 | ||||||
| Brief_identification | C-type lectin domain-containing protein | Accession_evidence | UniProt | TR:Q60F71 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 26 Sep 2014 00:00:00 | WBPerson4025 | ||||
| Remark | [20040920 po] made this model based on EST data(yk1666a10.3) | Curator_confirmed | WBPerson1867 | |||
| [140926 gw3] Merged Y54G2A.39 and Y54G2A.9 because there appears to be incomplete operon processing between these two that makes a non-coding transcript incorporating both coding regions. | Curator_confirmed | WBPerson4025 | ||||
| From_analysis | RNASeq | |||||
| Method | curated |
