WormBase Tree Display for Sequence: Y59A8B

Y59A8B DNA: Y59A8B 174664
  SMap: S_child: Gene_child (46)
      CDS_child (649)
      Transcript (63)
      Pseudogene: Y59A8B.5 90460 88350
        Y59A8B.t1 797 867
        Y59A8B.t2 1240 1311
        Y59A8B.t4 2140 2210
        Y59A8B.t5 3207 3277
        Y59A8B.t6 3776 3847
      Transposon: WBTransposon00000551 20090 20219
        WBTransposon00000412 75268 75419
      Nongenomic: yk175d9 101103 112706
        yk329c9 131 4608
      PCR_product: cenix:153-g5 82252 83739
        cenix:153-h5 100977 101614
        cenix:170-a10 161865 162463
        cenix:170-b10 58774 59314
        cenix:170-c10 50190 50535
        cenix:170-d10 26631 27042
        cenix:170-e10 21803 22062
        cenix:170-g9 145802 146143
        cenix:170-h9 156285 156964
        cenix:180-b10 1007 1878
        cenix:190-g10 69800 69923
        cenix:236-d2 77852 77968
        cenix:236-e2 116134 116274
        cenix:245-h1 126324 126581
        cenix:247-a9 136642 136884
        cenix:81-e4 153006 153591
        cenix:81-g4 85923 86492
        cenix:81-h7 88193 88909
        cenix:92-d1 15963 17662
        mv_G_YK1700 140720 147900
        mv_G_YK7603 132611 136750
        mv_Y59A8B.a 108 2017
        mv_Y59A8B.b 2670 4220
        mv_Y59A8B.c 7305 19473
        mv_Y59A8B.d 21795 23264
        mv_Y59A8B.e 24569 34290
        mv_Y59A8B.f 35251 35797
        mv_Y59A8B.g 39725 50526
        mv_Y59A8B.i 64496 65367
        mv_Y59A8B.j 69232 71805
        mv_Y59A8B.j_1 68717 71805
        mv_Y59A8B.k 77677 78260
        mv_Y59A8B.k_1 80465 81282
        mv_Y59A8B.l 78857 79485
        mv_Y59A8B.n 82861 90327
        mv_Y59A8B.o 92934 112669
        mv_Y59A8B.p 114039 122767
        mv_Y59A8B.p_1 114039 131152
        mv_Y59A8B.r 118031 122767
        mv_Y59A8B.r_1 126416 131152
        mv_Y59A8B.u 152906 153890
        mv_Y59A8B.v 156264 156663
        mv_Y59A8B.w 157580 162505
        mv_Y59A8B.x 163765 166138
        mv_Y59A8B.y 166489 168404
        mv_Y59A8C.a 99398 112669
        p_Y59A8B.10_93 147902 149901
        p_Y59A8B.12_93 156665 157580
        p_Y59A8B.19_93 75676 77675
        p_Y59A8B.22_93 50528 52527
        sjj2_Y59A8B.10 143615 144196
        sjj2_Y59A8B.11 152945 153900
        sjj2_Y59A8B.12 156036 156765
        sjj2_Y59A8B.13 164454 165201
        sjj2_Y59A8B.22.1 38939 39836
        sjj2_Y59A8B.24 21694 23192
        sjj2_Y59A8B.3 82562 83739
        sjj_Y59A8A.a 14323 16738
        sjj_Y59A8A.b 26301 28809
        sjj_Y59A8A.c 34776 35841
        sjj_Y59A8B.a 173498 174405
        sjj_Y59A8C.a 99359 101224
        sjj_Y59A8C.b 95797 98451
        sjj_Y59A8C.c 82894 85237
        sjj_Y59A8C.d 80529 81708
        sjj_Y59A8C.e 78815 79848
        sjj_Y59A8C.f 77204 78334
        sjj_Y59A8C.g 69625 71747
        sjj_Y59A8C.h 56775 59569
        sjj_Y59A8C.i 44805 47498
      Allele (4288)
      Oligo_set (15)
      Feature_object (1047)
      Feature_data: Y59A8B:Polysome 1 174664
        Y59A8B:TranscriptionallyActiveRegion 1 174664
        Y59A8B:ChIPSeqTF 1 174664
        Y59A8B:TRF 1 174664
        Y59A8B:Dust 1 174664
        Y59A8B:inverted 1 174664
      Homol_data (20)
  Structure: From: Source: CHROMOSOME_V
    Overlap_right: Y37H2A 174564
    Overlap_left: E01B7
    Clone_left_end: Y37H2 174564
      Y59A8B 1
    Clone_right_end: E01B7 101
      TY8 14360
      Y59A8B 174664
  DB_info: Database: EMBL NDB_AC AL132898
        NDB_SV AL132898.3
    DB_remark: [121025] Sequence correction: SNP 0 bases @ 20732
      [121025] Sequence correction WBsf268072 : Insertion A1 bases from @ 46427
      [121025] Sequence correction WBsf268099 : Insertion C1 bases from @ 59638
    Keyword: HTG
    EMBL_dump_info: EMBL_dump_method: worm_EMBL-dump
  Origin: From_author: Sulston JE
    From_laboratory: HX
    Date_directory: 000720
    Species: Caenorhabditis elegans
    Strain: WBStrain00000001
  Visible: Clone: Y59A8B
  Properties: Genomic_canonical
    Checksum: MD5: 3e8561344dd8ac169390b85a2517279c
    Status: Finished: 24 Jul 2000 00:00:00
      Submitted: 23 Oct 2000 00:00:00
      Annotated: 27 Jul 2000 00:00:00
  Map: Sequence-V Ends: Left: 10443
        Right: 10485
  Interpolated_map_position: V 13.4562
  Assembly_tags: Clone right end 104 101 E01B7
      14360 14363 TY8
      101 104 E01B7
    Finished Left 4 1 Y59A8B
      1 4 Y59A8B
    annotation 31559 31879 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat
          First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Part of an inverted repeat.Data edited to reverse sequence. Possible base discrepancies where there are base differences in the reverse sequence.
      34550 34551 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat
      41423 41563 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - inverted repeat
          First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Part of an inverted repeat
      130979 130982 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - 4 Ts missing from one clone
      74753 74817 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primer chemistry only over this region
      133535 133548 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here -
      151087 151092 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here -
      87707 87704 G missing in two templates
      114646 114603 First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here -
      172829 172833 First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat
      87704 87707 G missing in two templates
      172830 172834 First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -single clone in loop between inverted repeatPrimer chemistry onlyPossible base discrepancy
    Clone left end 174568 174563 Y37H2
      174569 174564 Y37H2
    Finished Right 174660 174663 Y59A8B
      174664 174661 Y59A8B
  Method: Genomic_canonical