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WormBase Tree Display for Sequence: Y59A8B

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Name Class

Y59A8BDNAY59A8B174664
SMapS_childGene_child (46)
CDS_child (649)
TranscriptY59A8B.1b194747303
Y59A8B.27107967108031
Y59A8B.289514695083
Y59A8B.29110874110923
Y59A8B.30108031107967
Y59A8B.31147363147419
Y59A8B.32148615148702
Y59A8B.33110923110874
Y59A8B.34150486150402
Y59A8B.359508395142
Y59A8B.3682438166
Y59A8B.37150402150486
Y59A8B.3881668243
Y59A8B.39107178107287
Y59A8B.39a107195107217
Y59A8B.39b107236107258
Y59A8B.408202682549
Y59A8B.411848818076
Y59A8B.42135944135542
Y59A8B.43144094143641
Y59A8B.44114016120326
Y59A8B.45114016128711
Y59A8B.46114016118130
Y59A8B.t315241592
Y59A8B.10a.1147906140450
Y59A8B.10b.1146092140718
Y59A8B.10c.1142476140718
Y59A8B.10d.1152403140467
Y59A8B.11a.1155646152852
Y59A8B.11a.2154907152852
Y59A8B.11a.3155645152848
Y59A8B.11a.4155645152848
Y59A8B.11b.1155573152904
Y59A8B.11c.1155645152848
Y59A8B.12.1156670156155
Y59A8B.13a.1157579166140
Y59A8B.13b.1157569168564
Y59A8B.13c.1157579166140
Y59A8B.13d.1157569168564
Y59A8B.13e.1164569168406
Y59A8B.13f.1164569166140
Y59A8B.19.17767678317
Y59A8B.1a.1196396728
Y59A8B.20.17181465793
Y59A8B.21a.15670664992
Y59A8B.21b.15670664710
Y59A8B.22a.15052838709
Y59A8B.22b.14796239723
Y59A8B.22c.14780439723
Y59A8B.22d.14352939723
Y59A8B.23a.13720924332
Y59A8B.23b.13408424567
Y59A8B.23c.13729326075
Y59A8B.24.12239522595
Y59A8B.25.1125843124224
Y59A8B.26a.18128380426
Y59A8B.26b.18128380463
Y59A8B.3.18466282859
Y59A8B.4.18777285087
Y59A8B.6.192925112799
Y59A8B.7.1114017123164
Y59A8B.8.1136753132609
Y59A8B.9.1126415131154
PseudogeneY59A8B.59046088350
Y59A8B.t1797867
Y59A8B.t212401311
Y59A8B.t421402210
Y59A8B.t532073277
Y59A8B.t637763847
TransposonWBTransposon000005512009020219
WBTransposon000004127526875419
Nongenomicyk175d9101103112706
yk329c91314608
PCR_product (70)
Allele (4288)
Oligo_set (15)
Feature_object (1047)
Feature_dataY59A8B:Polysome1174664
Y59A8B:TranscriptionallyActiveRegion1174664
Y59A8B:ChIPSeqTF1174664
Y59A8B:TRF1174664
Y59A8B:Dust1174664
Y59A8B:inverted1174664
Homol_data (20)
StructureFromSourceCHROMOSOME_V
Overlap_rightY37H2A174564
Overlap_leftE01B7
Clone_left_endY37H2174564
Y59A8B1
Clone_right_endE01B7101
TY814360
Y59A8B174664
DB_infoDatabaseEMBLNDB_ACAL132898
NDB_SVAL132898.3
DB_remark[121025] Sequence correction: SNP 0 bases @ 20732
[121025] Sequence correction WBsf268072 : Insertion A1 bases from @ 46427
[121025] Sequence correction WBsf268099 : Insertion C1 bases from @ 59638
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorSulston JE
From_laboratoryHX
Date_directory000720
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneY59A8B
PropertiesGenomic_canonical
ChecksumMD53e8561344dd8ac169390b85a2517279c
StatusFinished24 Jul 2000 00:00:00
Submitted23 Oct 2000 00:00:00
Annotated27 Jul 2000 00:00:00
MapSequence-VEndsLeft10443
Right10485
Interpolated_map_positionV13.4562
Assembly_tagsClone right end104101E01B7
1436014363TY8
101104E01B7
Finished Left41Y59A8B
14Y59A8B
annotation3155931879First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat
First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Part of an inverted repeat.Data edited to reverse sequence. Possible base discrepancies where there are base differences in the reverse sequence.
3455034551First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat
4142341563First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - inverted repeat
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[x] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Part of an inverted repeat
130979130982
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[ ] Single clone region
[ ] Forced join
[x] Other
Add a comment here -
4 Ts missing from one clone
7475374817
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[ ] Single clone region
[ ] Forced join
[x] Other
Add a comment here -
primer chemistry only over this region
133535133548
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[x] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
151087151092
First select a Feature -
[ ] Unsure
[x] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[x] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
8770787704G missing in two templates
114646114603First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here -
172829172833First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat
8770487707G missing in two templates
172830172834First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -single clone in loop between inverted repeatPrimer chemistry onlyPossible base discrepancy
Clone left end174568174563Y37H2
174569174564Y37H2
Finished Right174660174663Y59A8B
174664174661Y59A8B
MethodGenomic_canonical