WormBase Tree Display for Sequence: Y59A8B
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Y59A8B | DNA | Y59A8B | 174664 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (46) | ||||
CDS_child (649) | ||||||
Transcript | Y59A8B.1b | 19474 | 7303 | |||
Y59A8B.27 | 107967 | 108031 | ||||
Y59A8B.28 | 95146 | 95083 | ||||
Y59A8B.29 | 110874 | 110923 | ||||
Y59A8B.30 | 108031 | 107967 | ||||
Y59A8B.31 | 147363 | 147419 | ||||
Y59A8B.32 | 148615 | 148702 | ||||
Y59A8B.33 | 110923 | 110874 | ||||
Y59A8B.34 | 150486 | 150402 | ||||
Y59A8B.35 | 95083 | 95142 | ||||
Y59A8B.36 | 8243 | 8166 | ||||
Y59A8B.37 | 150402 | 150486 | ||||
Y59A8B.38 | 8166 | 8243 | ||||
Y59A8B.39 | 107178 | 107287 | ||||
Y59A8B.39a | 107195 | 107217 | ||||
Y59A8B.39b | 107236 | 107258 | ||||
Y59A8B.40 | 82026 | 82549 | ||||
Y59A8B.41 | 18488 | 18076 | ||||
Y59A8B.42 | 135944 | 135542 | ||||
Y59A8B.43 | 144094 | 143641 | ||||
Y59A8B.44 | 114016 | 120326 | ||||
Y59A8B.45 | 114016 | 128711 | ||||
Y59A8B.46 | 114016 | 118130 | ||||
Y59A8B.t3 | 1524 | 1592 | ||||
Y59A8B.10a.1 | 147906 | 140450 | ||||
Y59A8B.10b.1 | 146092 | 140718 | ||||
Y59A8B.10c.1 | 142476 | 140718 | ||||
Y59A8B.10d.1 | 152403 | 140467 | ||||
Y59A8B.11a.1 | 155646 | 152852 | ||||
Y59A8B.11a.2 | 154907 | 152852 | ||||
Y59A8B.11a.3 | 155645 | 152848 | ||||
Y59A8B.11a.4 | 155645 | 152848 | ||||
Y59A8B.11b.1 | 155573 | 152904 | ||||
Y59A8B.11c.1 | 155645 | 152848 | ||||
Y59A8B.12.1 | 156670 | 156155 | ||||
Y59A8B.13a.1 | 157579 | 166140 | ||||
Y59A8B.13b.1 | 157569 | 168564 | ||||
Y59A8B.13c.1 | 157579 | 166140 | ||||
Y59A8B.13d.1 | 157569 | 168564 | ||||
Y59A8B.13e.1 | 164569 | 168406 | ||||
Y59A8B.13f.1 | 164569 | 166140 | ||||
Y59A8B.19.1 | 77676 | 78317 | ||||
Y59A8B.1a.1 | 19639 | 6728 | ||||
Y59A8B.20.1 | 71814 | 65793 | ||||
Y59A8B.21a.1 | 56706 | 64992 | ||||
Y59A8B.21b.1 | 56706 | 64710 | ||||
Y59A8B.22a.1 | 50528 | 38709 | ||||
Y59A8B.22b.1 | 47962 | 39723 | ||||
Y59A8B.22c.1 | 47804 | 39723 | ||||
Y59A8B.22d.1 | 43529 | 39723 | ||||
Y59A8B.23a.1 | 37209 | 24332 | ||||
Y59A8B.23b.1 | 34084 | 24567 | ||||
Y59A8B.23c.1 | 37293 | 26075 | ||||
Y59A8B.24.1 | 22395 | 22595 | ||||
Y59A8B.25.1 | 125843 | 124224 | ||||
Y59A8B.26a.1 | 81283 | 80426 | ||||
Y59A8B.26b.1 | 81283 | 80463 | ||||
Y59A8B.3.1 | 84662 | 82859 | ||||
Y59A8B.4.1 | 87772 | 85087 | ||||
Y59A8B.6.1 | 92925 | 112799 | ||||
Y59A8B.7.1 | 114017 | 123164 | ||||
Y59A8B.8.1 | 136753 | 132609 | ||||
Y59A8B.9.1 | 126415 | 131154 | ||||
Pseudogene | Y59A8B.5 | 90460 | 88350 | |||
Y59A8B.t1 | 797 | 867 | ||||
Y59A8B.t2 | 1240 | 1311 | ||||
Y59A8B.t4 | 2140 | 2210 | ||||
Y59A8B.t5 | 3207 | 3277 | ||||
Y59A8B.t6 | 3776 | 3847 | ||||
Transposon | WBTransposon00000551 | 20090 | 20219 | |||
WBTransposon00000412 | 75268 | 75419 | ||||
Nongenomic | yk175d9 | 101103 | 112706 | |||
yk329c9 | 131 | 4608 | ||||
PCR_product (70) | ||||||
Allele (4288) | ||||||
Oligo_set (15) | ||||||
Feature_object (1047) | ||||||
Feature_data | Y59A8B:Polysome | 1 | 174664 | |||
Y59A8B:TranscriptionallyActiveRegion | 1 | 174664 | ||||
Y59A8B:ChIPSeqTF | 1 | 174664 | ||||
Y59A8B:TRF | 1 | 174664 | ||||
Y59A8B:Dust | 1 | 174664 | ||||
Y59A8B:inverted | 1 | 174664 | ||||
Homol_data (20) | ||||||
Structure | From | Source | CHROMOSOME_V | |||
Overlap_right | Y37H2A | 174564 | ||||
Overlap_left | E01B7 | |||||
Clone_left_end | Y37H2 | 174564 | ||||
Y59A8B | 1 | |||||
Clone_right_end | E01B7 | 101 | ||||
TY8 | 14360 | |||||
Y59A8B | 174664 | |||||
DB_info | Database | EMBL | NDB_AC | AL132898 | ||
NDB_SV | AL132898.3 | |||||
DB_remark | [121025] Sequence correction: SNP 0 bases @ 20732 | |||||
[121025] Sequence correction WBsf268072 : Insertion A1 bases from @ 46427 | ||||||
[121025] Sequence correction WBsf268099 : Insertion C1 bases from @ 59638 | ||||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Sulston JE | ||||
From_laboratory | HX | |||||
Date_directory | 000720 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | Y59A8B | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 3e8561344dd8ac169390b85a2517279c | ||||
Status | Finished | 24 Jul 2000 00:00:00 | ||||
Submitted | 23 Oct 2000 00:00:00 | |||||
Annotated | 27 Jul 2000 00:00:00 | |||||
Map | Sequence-V | Ends | Left | 10443 | ||
Right | 10485 | |||||
Interpolated_map_position | V | 13.4562 | ||||
Assembly_tags | Clone right end | 104 | 101 | E01B7 | ||
14360 | 14363 | TY8 | ||||
101 | 104 | E01B7 | ||||
Finished Left | 4 | 1 | Y59A8B | |||
1 | 4 | Y59A8B | ||||
annotation | 31559 | 31879 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat | |||
First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Part of an inverted repeat.Data edited to reverse sequence. Possible base discrepancies where there are base differences in the reverse sequence. | ||||||
34550 | 34551 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat | ||||
41423 | 41563 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - inverted repeat | ||||
First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Part of an inverted repeat | ||||||
130979 | 130982 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - 4 Ts missing from one clone | ||||
74753 | 74817 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - primer chemistry only over this region | ||||
133535 | 133548 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | ||||
151087 | 151092 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - | ||||
87707 | 87704 | G missing in two templates | ||||
114646 | 114603 | First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - | ||||
172829 | 172833 | First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - single clone in inverted repeat | ||||
87704 | 87707 | G missing in two templates | ||||
172830 | 172834 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[x] Single clone region[ ] Forced join[ ] OtherAdd a comment here -single clone in loop between inverted repeatPrimer chemistry onlyPossible base discrepancy | ||||
Clone left end | 174568 | 174563 | Y37H2 | |||
174569 | 174564 | Y37H2 | ||||
Finished Right | 174660 | 174663 | Y59A8B | |||
174664 | 174661 | Y59A8B | ||||
Method | Genomic_canonical |