WormBase Tree Display for Sequence: Y75B8A
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| Y75B8A | DNA | Y75B8A | 298407 | ||
|---|---|---|---|---|---|
| SMap | S_child (12) | ||||
| Structure | From | Source | CHROMOSOME_III | ||
| Overlap_right | Y49E10 | 298301 | |||
| Overlap_left | Y79H2A | ||||
| Clone_left_end | Y75B8 | 1 | |||
| Y49E10 | 298301 | ||||
| Y75B8A | 1 | ||||
| Clone_right_end | Y79H2 | 184512 | |||
| Y75B8A | 298407 | ||||
| DB_info | Database | EMBL | NDB_AC | AL033514 | |
| NDB_SV | AL033514.2 | ||||
| Secondary_accession | AL022286 | ||||
| DB_remark | [121025] Sequence correction WBsf267929 : Insertion T1 bases from @ 34260 | ||||
| Keyword | HTG | ||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | |||
| Origin | From_author | Barlow K | |||
| From_laboratory | HX | ||||
| Date_directory | 981022 | ||||
| Species | Caenorhabditis elegans | ||||
| Strain | WBStrain00000001 | ||||
| Visible | Clone | Y75B8A | |||
| Properties | Genomic_canonical | ||||
| Checksum | MD5 | 3825c9cecb37da0fa720d72f8d86f4c2 | |||
| Status | Finished | 22 Oct 1998 00:00:00 | |||
| Submitted | 12 Nov 1998 00:00:00 | ||||
| Annotated | 01 Jan 1980 00:00:00 | ||||
| Map | Sequence-III | Ends | Left | 6166 | |
| Right | 6267 | ||||
| Interpolated_map_position | III | 16.1292 | |||
| Assembly_tags | Clone left end | 1 | 6 | Y75B8 | |
| 298301 | 298306 | Y49E10 | |||
| Finished Left | 1 | 6 | Y75B8A | ||
| annotation | 34260 | 34262 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -This area is covered only by two subclones. The subclone from the Y75B8 library reads gtg whereas the suclone from Y79H2 reads gttgg. The sequence has been edited to the sequence given by the Y75B8 clone. | ||
| 33717 | 33840 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region only covered by a single clone sw82g1 as well as sonicated reads from this subclone | |||
| 62773 | 62923 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by sonicated reads of subclone sx15g5 | |||
| 193357 | 193535 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by reads from a sonication of subclone sx14b2. | |||
| 211831 | 211869 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region only contains sonicated reads from subclone sx09f1. | |||
| 273368 | 273501 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by sonicated reads from subclone sx12c2. | |||
| 49585 | 49602 | First select a Feature -[ ] Unsure[x] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[x] OtherAdd a comment here -number of g's in this run is uncertain it has been edited to the maximum ie 18 | |||
| 92651 | 92663 | First select a Feature -[X] Unsure[ ] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -This region of 13bp is covered only by single direction dye primers. There are two subclones covering this point. The region falls in the arm of an inverted repeat. | |||
| 121730 | 121761 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Clone Y75B8 has deleted these copies of the tandem repeat. It has been edited to the maximum number as shown by the overlapping clones H26P12 and Y79H2. | |||
| 170840 | 170842 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -The sequence for the overlapping cloneY79H2 reads cAg and not cGg. This looksto be a base variation between thesetwo clones. | |||
| 177609 | 177888 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only by the subclone qb19b1. Region is only covered with terminator chemistry. This is contained in the arm of an inverted repeat. | |||
| 178204 | 178668 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only by the subclone qb19a5.Subclone has been sequenced with terminator and primer chemistries. | |||
| 219184 | 219210 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Region is covered by two subclones one of which has deleted out one copy of a tandem repeat at this point. | |||
| 229457 | 229494 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only by a single direction primer read. This region is in an arm of an inverted repeat. | |||
| 229582 | 229613 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region is covered only with a single clone, which lies in the arm of an inverted repeat. | |||
| 284270 | 284306 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region is covered only by a single clone. The subclone has been sequenced with both chemistries. | |||
| 103372 | 104263 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Tandem repeat region containing false join and also single clone regions. Repeat element is 11bp long. There is variation between some of the copies. | |||
| 185287 | 186390 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Region contains dispersed IR-2 inverted repeat similar to sequence U86947. The repeat is flanked by a tandem duplication of the sequence CAATT. This region contains some areas of single clone. The first arm of the inverted repeat has approximately 135bp missing which has been represented with the sequence from the second arm. | |||
| 198487 | 199278 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence ATAG. The region contains a single clone. | |||
| 209915 | 210969 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -The tandem repeat unit is 31bp. The area also contains a single clone region. | |||
| 276833 | 279139 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -This tandem repeat region contains a forced join and also single clone regions. The repeat elements are approximately 37bp long, and show variation between the copies. | |||
| Clone right end | 184509 | 184512 | Y79H2 | ||
| Finished Right | 298402 | 298407 | Y75B8A | ||
| Method | Genomic_canonical |
