WormBase Tree Display for CDS: Y79H2A.11b
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| Y79H2A.11b | Evidence | Curator_confirmed | WBPerson4025 | |||
|---|---|---|---|---|---|---|
| Inferred_automatically | make_isoforms.pl | |||||
| SMap | S_parent | Sequence | CHROMOSOME_III | |||
| Structure | Source_exons | 1 | 635 | |||
| 1658 | 1891 | |||||
| 2541 | 2717 | |||||
| 3939 | 4119 | |||||
| 4881 | 5027 | |||||
| 6299 | 6598 | |||||
| 7819 | 7917 | |||||
| 8625 | 8801 | |||||
| DB_info | Database | KEGG | KEGG_id | 2.7.11.1 | ||
| TrEMBL | UniProtAcc | A0A1I6CM54 | ||||
| UniProt | UniProtAcc | A0A1I6CM54 | ||||
| AlphaFold | entry | A0A1I6CM54 | ||||
| NCBI_protein | GI_number | GI:1098714277 | ||||
| Protein_id | CHROMOSOME_III | SFQ94279 | 1 | |||
| DB_remark | ZYG-8 protein; contains similarity to Pfam domains PF00069 (Protein kinase domain), PF03607 (Doublecortin); contains similarity to Interpro domains IPR011009 (Protein kinase-like domain superfamily), IPR000719 (Protein kinase domain), IPR003533 (Doublecortin domain), IPR036572 (Doublecortin domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Curator_confirmed | WBPerson4025 | ||||
| Feature_evidence | WBsf126438 | |||||
| Visible | Gene | WBGene00006993 | ||||
| Corresponding_transcript | Y79H2A.11b.1 | |||||
| Corresponding_protein | CE51800 | |||||
| Corresponding_PCR_product | TH:331E12 | |||||
| cenix:331-e12 | ||||||
| cenix:331-h10 | ||||||
| mv_Y75B8A.36 | ||||||
| mv_Y79H2A.11 | ||||||
| sjj_Y75B8A.36 | ||||||
| sjj_Y79H2A.11 | ||||||
| Corresponding_oligo_set (15) | ||||||
| Matching_cDNA (12) | ||||||
| RNAi_result | WBRNAi00058524 | |||||
| WBRNAi00108252 | ||||||
| WBRNAi00037852 | ||||||
| WBRNAi00069164 | ||||||
| WBRNAi00021452 | ||||||
| WBRNAi00069154 | ||||||
| WBRNAi00058523 | ||||||
| WBRNAi00092874 | ||||||
| WBRNAi00069146 | ||||||
| WBRNAi00002671 | ||||||
| Microarray_results (17) | ||||||
| Brief_identification | non-specific serine/threonine protein kinase | Accession_evidence | UniProt | TR:A0A1I6CM54 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 18 Oct 2016 14:54:42 | WBPerson1983 | ||||
| Remark | [160730 wormpub] Created this isoform based on the RNASeq splice data and the SL1 site. | Curator_confirmed | WBPerson4025 | |||
| Feature_evidence | WBsf126438 | |||||
| From_analysis | RNASeq | |||||
| Method | curated |
