WormBase Tree Display for Pseudogene: ZC47.10
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| ZC47.10 | Evidence | Inferred_automatically | make_isoforms.pl | ||
|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZC47 | ||
| Structure | Source_exons | 1 | 83 | ||
| 814 | 1450 | ||||
| 1502 | 1744 | ||||
| DB_info | DB_remark | coding pseudogene fbxa-34 | |||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis elegans | ||||
| Type | Coding_pseudogene | ||||
| Attributes | Transcribed | ||||
| SubType | unprocessed_pseudogene | ||||
| Visible | Gene | WBGene00013842 | |||
| Brief_identification | Curated pseudogene | ||||
| Corresponding_PCR_product | TH:332A3 | ||||
| cenix:217-c6 | |||||
| cenix:332-a3 | |||||
| cenix:332-b4 | |||||
| mv_G_YK8713 | |||||
| Corresponding_oligo_set | A_12_P105281 | ||||
| Aff_ZC47.10 | |||||
| GPL19516_CGZ0055930 | |||||
| GPL21109_ZC47.10 | |||||
| GPL3518_CE25666 | |||||
| GPL9450_ZC47.10 | |||||
| cea2.p.158371 | |||||
| Variation (133) | |||||
| Microarray_results | A_12_P105281 | ||||
| Aff_ZC47.10 | |||||
| GPL19516_CGZ0055930 | |||||
| GPL21109_ZC47.10 | |||||
| GPL3518_CE25666 | |||||
| GPL9450_ZC47.10 | |||||
| cea2.p.158371 | |||||
| RNASeq_FPKM (74) | |||||
| Last_reviewed | 19 Oct 2005 00:00:00 | WBPerson1983 | |||
| Remark | [000127 dl] Prediction modified based on family domain structure | ||||
| [000128 dl] Possible frame-shift | |||||
| [040610 pad] Gene prediction changed from valid CDS to Pseudogene. To create a valid CDS the prediction utilised very poor splice sites to avoid an in-frame stop codon in exon 2. This gene appears to have been duplicated numerous times. Some of the duplications seem to be Pseudogenic where as some are valid CDSs. | |||||
| [051019 pad] Gene prediction comfirmed as a pseudogene following correspondence from Jim Thomas, [fbxa-34]. | Person_evidence | WBPerson655 | |||
| Method | Pseudogene |
