WormBase Tree Display for CDS: ZK377.2b
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| ZK377.2b | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | ZK377 | |||
| Structure | Source_exons (12) | |||||
| DB_info | Database | SwissProt | UniProtAcc | G5EBF1 | ||
| UniProtIsoformAcc | G5EBF1-1 | |||||
| UniProt | UniProtAcc | G5EBF1 | ||||
| UniProt_GCRP | UniProtAcc | G5EBF1 | ||||
| AlphaFold | entry | G5EBF1 | ||||
| NCBI_protein | GI_number | GI:351050185 | ||||
| TREEFAM | TREEFAM_ID | TF351053 | ||||
| Protein_id | CHROMOSOME_X | CCD64328 | 1 | |||
| DB_remark | SAX-3 protein; contains similarity to Pfam domains PF00041 (Fibronectin type III domain), PF07679 (Immunoglobulin I-set domain), PF13927 (Immunoglobulin domain); contains similarity to Interpro domains IPR003599 (Immunoglobulin subtype), IPR003598 (Immunoglobulin subtype 2), IPR003961 (Fibronectin type III), IPR013098 (Immunoglobulin I-set), IPR013783 (Immunoglobulin-like fold), IPR013106 (Immunoglobulin V-set domain), IPR036179 (Immunoglobulin-like domain superfamily), IPR036116 (Fibronectin type III superfamily) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | EMBL | C68275 | |||
| Inferred_automatically | transcript_builder | |||||
| Visible | Gene | WBGene00004729 | ||||
| Corresponding_transcript | ZK377.2b.1 | |||||
| Corresponding_protein | CE31267 | |||||
| Corresponding_PCR_product | cenix:64-a2 | |||||
| mv_AAC38848 | ||||||
| sjj_ZK377.2 | ||||||
| sjj_ZK377.3 | ||||||
| Corresponding_oligo_set (17) | ||||||
| Matching_cDNA (15) | ||||||
| RNAi_result | WBRNAi00086088 | |||||
| WBRNAi00086133 | ||||||
| WBRNAi00009468 | ||||||
| WBRNAi00009467 | ||||||
| WBRNAi00067130 | ||||||
| WBRNAi00059385 | ||||||
| Microarray_results (22) | ||||||
| Brief_identification | Protein sax-3 | Accession_evidence | UniProt | SP:G5EBF1 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
