WormBase Tree Display for CDS: ZK662.4
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| ZK662.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | CHROMOSOME_X | |||
| Structure | Source_exons | 1 | 74 | |||
| 150 | 608 | |||||
| 1441 | 1722 | |||||
| 1769 | 1865 | |||||
| 1918 | 3773 | |||||
| 3821 | 4235 | |||||
| 4289 | 5362 | |||||
| 5412 | 5477 | |||||
| DB_info | Database | SwissProt | UniProtAcc | Q27395 | ||
| UniProt | UniProtAcc | Q27395 | ||||
| UniProt_GCRP | UniProtAcc | Q27395 | ||||
| AlphaFold | entry | Q27395 | ||||
| NCBI_protein | GI_number | GI:3881741 | ||||
| TREEFAM | TREEFAM_ID | TF317492 | ||||
| Protein_id | CHROMOSOME_X | CAB01901 | 1 | |||
| DB_remark | LIN-15B protein; contains similarity to Interpro domains IPR040129 (Protein lin-15B-like), IPR012337 (Ribonuclease H-like superfamily), IPR006612 (THAP-type zinc finger) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00023497 | ||||
| Corresponding_transcript | ZK662.4.1 | |||||
| ZK662.4.2 | ||||||
| Corresponding_protein | CE15381 | |||||
| Corresponding_PCR_product | cenix:54-g7 | |||||
| mv_AAA20088 | ||||||
| sjj2_ZK662.4.1 | ||||||
| sjj_ZK662.4 | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA | male_Nanopore_Roach_53233 | Inferred_automatically | transcript_builder.pl | |||
| male_Nanopore_Roach_107160 | Inferred_automatically | transcript_builder.pl | ||||
| young_adult_Nanopore_Roach_82027 | Inferred_automatically | transcript_builder.pl | ||||
| L4_Nanopore_Roach_30450 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_23457 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_66181 | Inferred_automatically | transcript_builder.pl | ||||
| L2_Nanopore_Roach_81474 | ||||||
| L1_Nanopore_Roach_5092 | Inferred_automatically | transcript_builder.pl | ||||
| male_Nanopore_Roach_5515 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_46326 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_67265 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_46801 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Roach_64381 | Inferred_automatically | transcript_builder.pl | ||||
| adult_Nanopore_Roach_4784 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_189997 | Inferred_automatically | transcript_builder.pl | ||||
| yk644g9.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk607g11.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_90642 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_105184 | Inferred_automatically | transcript_builder.pl | ||||
| CEESM39F | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_162683 | Inferred_automatically | transcript_builder.pl | ||||
| U10412 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG4780|c1_g1_i1 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_304825 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_76423 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_189343 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_118122 | Inferred_automatically | transcript_builder.pl | ||||
| yk872b03.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk651b3.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_296519 | Inferred_automatically | transcript_builder.pl | ||||
| yk1280a10.3 | Inferred_automatically | transcript_builder.pl | ||||
| L1_Nanopore_Li_62928 | Inferred_automatically | transcript_builder.pl | ||||
| yk651b3.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk1374e12.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk872b03.5 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_229707 | Inferred_automatically | transcript_builder.pl | ||||
| RST3_378636 | Inferred_automatically | transcript_builder.pl | ||||
| yk201g9.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_246067 | Inferred_automatically | transcript_builder.pl | ||||
| RST5_372916 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_65204 | Inferred_automatically | transcript_builder.pl | ||||
| yk647h2.3 | Inferred_automatically | transcript_builder.pl | ||||
| elegans_PE_SS_GG4780|c1_g1_i2 | Inferred_automatically | transcript_builder.pl | ||||
| yk62g9.3 | Inferred_automatically | transcript_builder.pl | ||||
| yk365f3.3 | Inferred_automatically | transcript_builder.pl | ||||
| EM_Nanopore_Li_8828 | Inferred_automatically | transcript_builder.pl | ||||
| YA_Nanopore_Li_64891 | Inferred_automatically | transcript_builder.pl | ||||
| yk326f3.5 | Inferred_automatically | transcript_builder.pl | ||||
| RNAi_result (17) | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | Protein lin-15B | Accession_evidence | UniProt | SP:Q27395 | ||
| RNASeq_FPKM (74) | ||||||
| Associated_feature | WBsf000236 | |||||
| Method | curated |
