WormBase Tree Display for Expression_cluster: [cgc5767]:cluster_63
expand all nodes | collapse all nodes | view schema
[cgc5767]:cluster_63 | Description | Early embryonic development gene expression profile. |
---|---|---|
Species | Caenorhabditis elegans | |
Algorithm | QT clustering | |
Reference | WBPaper00005767 | |
Microarray_results | Aff_Y39A3C_82.B | |
Aff_C03D6.6 | ||
Aff_F45G2.7 | ||
Aff_C24D10.5 | ||
Aff_D2007.4 | ||
Gene | WBGene00021441 | |
WBGene00007278 | ||
WBGene00009733 | ||
WBGene00016056 | ||
WBGene00017044 | ||
Attribute_of | Microarray_experiment (12) | |
Remark | Clusters were generated by the QT clustering algorithm. The algorithm assembles a series of clusters ordered by size, largest first, with no limit on the number of clusters other than the coherence (cluster diameter) defined a priori (0.7 in our clusters). To ensure robust clusters the distance metric used for clustering was 1-Ravg , where Ravg was the average Pearson correlation coefficient between moving average profiles over 20 realizations of the data plus simulated noise. Noise was generated by a two-component model consisting of an additive Gaussian background with standard deviation 2 ppm, and a multiplicative Gaussian sampling error with s.d.=0.1. Simulated data were floored at 1 ppm. | |
Type: Co-expression Cluster |