WormBase Tree Display for CDS: F56A12.1
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| F56A12.1 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | F56A12 | |||
| Structure | Source_exons | 1 | 303 | |||
| 872 | 1001 | |||||
| 1374 | 1723 | |||||
| 2187 | 2411 | |||||
| DB_info | Database | SwissProt | UniProtAcc | O17894 | ||
| UniProt | UniProtAcc | O17894 | ||||
| UniProt_GCRP | UniProtAcc | O17894 | ||||
| AlphaFold | entry | O17894 | ||||
| NCBI_protein | GI_number | GI:58081860 | ||||
| Protein_id | CHROMOSOME_V | CAB04483 | 2 | |||
| DB_remark | UNC-39 protein; contains similarity to Pfam domains PF00046 (Homeodomain), PF16878 (Transcriptional regulator, SIX1, N-terminal SD domain); contains similarity to Interpro domains IPR031701 (Homeobox protein SIX1, N-terminal SD domain), IPR001356 (Homeobox domain), IPR009057 (Homeobox-like domain superfamily) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006775 | ||||
| Corresponding_transcript | F56A12.1.1 | |||||
| Corresponding_protein | CE37921 | |||||
| Corresponding_PCR_product | cenix:67-c5 | |||||
| mv_F56A12.1 | ||||||
| sjj_F56A12.1 | ||||||
| Corresponding_oligo_set | 18591292 | |||||
| 192928_at | ||||||
| A_12_P100793 | ||||||
| Aff_F56A12.1 | ||||||
| GPL13394_WBGene00006775 | ||||||
| GPL13914_F56A12.1 | ||||||
| GPL14144_F56A12.1_486-545_0.922_14_C | ||||||
| GPL14144_F56A12.1_709-768_0.927_12_B | ||||||
| GPL14144_F56A12.1_805-864_0.954_4_A | ||||||
| GPL19516_CGZ0024449 | ||||||
| GPL21109_F56A12.1 | ||||||
| GPL3518_CE11222 | ||||||
| GPL8304_CE_WBGene00006775_A | ||||||
| GPL8304_CE_WBGene00006775_C | ||||||
| GPL8673_F56A12_1P00145 | ||||||
| GPL8673_F56A12_1P00410 | ||||||
| GPL8673_F56A12_1P00934 | ||||||
| GPL9450_F56A12.1 | ||||||
| cea2.i.39997 | ||||||
| Matching_cDNA (17) | ||||||
| RNAi_result | WBRNAi00101784 | |||||
| WBRNAi00032912 | ||||||
| WBRNAi00089718 | ||||||
| WBRNAi00090158 | ||||||
| WBRNAi00090317 | ||||||
| WBRNAi00061182 | ||||||
| WBRNAi00015762 | ||||||
| WBRNAi00048581 | ||||||
| WBRNAi00114716 | ||||||
| WBRNAi00089999 | ||||||
| Microarray_results (19) | ||||||
| Brief_identification | Homeobox protein unc-39 | Accession_evidence | UniProt | SP:O17894 | ||
| RNASeq_FPKM (74) | ||||||
| Last_reviewed | 21 Dec 2004 00:00:00 | WBPerson1983 | ||||
| Remark | [041221 pad] Gene prediction altered based on OST data, altered splicing of final intron. | Accession_evidence | NDB | CB396694 | ||
| Curator_confirmed | WBPerson1983 | |||||
| Method | curated |
