WormBase Tree Display for CDS: SRAE_1000254200
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SRAE_1000254200 | SMap | S_parent | Sequence | SRAE_chr1 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 202 | |||
256 | 430 | |||||
3161 | 3308 | |||||
4544 | 5160 | |||||
5317 | 9139 | |||||
9661 | 10206 | |||||
10328 | 10423 | |||||
10606 | 11298 | |||||
DB_info | Database | UniProt | UniProtAcc | A0A090L3K6 | ||
UniProtId | A0A090L3K6_STRRB | |||||
DB_remark | contains similarity to Pfam domains PF00520 (Ion transport protein), PF08763 (Voltage gated calcium channel IQ domain), PF16905 (Voltage-dependent L-type calcium channel, IQ-associated); contains similarity to Interpro domains IPR014873 (Voltage-dependent calcium channel, alpha-1 subunit, IQ domain), IPR031649 (Voltage-dependent L-type calcium channel, IQ-associated domain), IPR005821 (Ion transport domain), IPR027359 (Voltage-dependent channel domain superfamily), IPR002077 (Voltage-dependent calcium channel, alpha-1 subunit) | |||||
Origin | From_laboratory | MBM | ||||
Species | Strongyloides ratti | |||||
Properties | Coding | CDS | ||||
CDS_predicted_by | wormbase | |||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00259157 | ||||
Corresponding_transcript | SRAE_1000254200.1 | |||||
Corresponding_protein | SRP01285 | |||||
Matching_cDNA | FC817159 | Inferred_automatically | transcript_builder.pl | |||
BI073786 | Inferred_automatically | transcript_builder.pl | ||||
BI322957 | Inferred_automatically | transcript_builder.pl | ||||
BI502401 | Inferred_automatically | transcript_builder.pl | ||||
BI073769 | Inferred_automatically | transcript_builder.pl | ||||
BI073903 | Inferred_automatically | transcript_builder.pl | ||||
BI073634 | Inferred_automatically | transcript_builder.pl | ||||
FC811597 | Inferred_automatically | transcript_builder.pl | ||||
BI074148 | Inferred_automatically | transcript_builder.pl | ||||
CB098188 | Inferred_automatically | transcript_builder.pl | ||||
BI502403 | Inferred_automatically | transcript_builder.pl | ||||
BI742082 | Inferred_automatically | transcript_builder.pl | ||||
FC812733 | Inferred_automatically | transcript_builder.pl | ||||
BQ090797 | Inferred_automatically | transcript_builder.pl | ||||
FC810994 | Inferred_automatically | transcript_builder.pl | ||||
BI323087 | Inferred_automatically | transcript_builder.pl | ||||
FC810414 | Inferred_automatically | transcript_builder.pl | ||||
BI450637 | Inferred_automatically | transcript_builder.pl | ||||
CB097428 | Inferred_automatically | transcript_builder.pl | ||||
Brief_identification | Voltage-dependent calcium channel type A subunit alpha-1 | |||||
RNASeq_FPKM | WBls:0000677 | 2.76067 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272497 | ||
2.76927 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272496 | ||||
2.79744 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272503 | ||||
2.99071 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272498 | ||||
3.04989 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272502 | ||||
3.20883 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000677.Female.WBbt:0007833.ERP002187.ERX272504 | ||||
WBls:0000678 | 0.732193 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322576 | |||
0.840899 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272493 | ||||
1.0059 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272499 | ||||
1.07339 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272494 | ||||
1.18572 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272500 | ||||
1.2828 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272501 | ||||
1.32765 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX272495 | ||||
1.44777 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000678.Female.WBbt:0007833.ERP002187.ERX322575 | ||||
WBls:0000680 | 26.2005 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000680.Unknown.WBbt:0007833.ERP001672.ERX200444 | |||
WBls:0000682 | 0.795345 | From_analysis | RNASeq.sratti.WBStrain00041039.WBls:0000682.Unknown.WBbt:0007833.ERP001672.ERX200443 | |||
Method | curated |