WormBase Tree Display for CDS: Y37E11C.1c
expand all nodes | collapse all nodes | view schema
Y37E11C.1c | Evidence | Curator_confirmed | WBPerson4025 | |||
---|---|---|---|---|---|---|
Inferred_automatically | make_isoforms.pl | |||||
SMap | S_parent | Sequence | M57 | |||
Structure | Source_exons | 1 | 89 | |||
3284 | 4179 | |||||
4693 | 5084 | |||||
5695 | 5889 | |||||
DB_info | Database | SwissProt | UniProtIsoformAcc | Q01630-3 | ||
TrEMBL | UniProtAcc | U4PLJ8 | ||||
UniProt | UniProtAcc | U4PLJ8 | ||||
AlphaFold | entry | U4PLJ8 | ||||
Protein_id | CHROMOSOME_IV | CDH92977 | 2 | |||
DB_remark | UNC-33 protein; contains similarity to Pfam domain PF01979 (Amidohydrolase family); contains similarity to Interpro domains IPR032466 (Metal-dependent hydrolase), IPR011059 (Metal-dependent hydrolase, composite domain superfamily), IPR006680 (Amidohydrolase-related) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | Curator_confirmed | WBPerson4025 | ||||
Feature_evidence | WBsf963289 | |||||
Visible | Gene | WBGene00006769 | ||||
Corresponding_transcript | Y37E11C.1c.1 | |||||
Corresponding_protein | CE31639 | |||||
Corresponding_PCR_product | cenix:151-a7 | |||||
mv_CAA78520 | ||||||
mv_CAA78521 | ||||||
mv_CAA78522 | ||||||
sjj_Y37E11C.1 | ||||||
Corresponding_oligo_set (18) | ||||||
Matching_cDNA | male_Nanopore_Roach_156301 | |||||
L1_Nanopore_Roach_16932 | ||||||
RNAi_result | WBRNAi00103588 | |||||
WBRNAi00020239 | ||||||
WBRNAi00086120 | ||||||
WBRNAi00055924 | ||||||
WBRNAi00089774 | ||||||
WBRNAi00090316 | ||||||
WBRNAi00030274 | ||||||
WBRNAi00090157 | ||||||
WBRNAi00089998 | ||||||
Microarray_results | SMD_Y37E11C.1 | |||||
176653_s_at | ||||||
176718_at | ||||||
A_12_P113671 | ||||||
Aff_Y37E11C.C | ||||||
GPL13394_WBGene00006769 | ||||||
GPL13914_Y37E11C.1 | ||||||
GPL14144_Y37E11C.1_1422-1481_0.858_14_C | ||||||
GPL14144_Y37E11C.1_2091-2150_0.904_3_A | ||||||
GPL14144_Y37E11C.1_2478-2537_0.862_13_B | ||||||
GPL19516_CGZ0044412 | ||||||
GPL19516_CGZ0044413 | ||||||
GPL21109_Y37E11C.1b | ||||||
GPL3518_CE31639 | ||||||
GPL8304_CE_WBGene00006769_A | ||||||
GPL8304_CE_WBGene00006769_B | ||||||
GPL8673_Y37E11C_1P01560 | ||||||
GPL8673_Y37E11C_1P01862 | ||||||
GPL8673_Y37E11C_1P02116 | ||||||
cea2.3.27660 | ||||||
Brief_identification | Amidohydrolase-related domain-containing protein | Accession_evidence | UniProt | TR:U4PLJ8 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 02 Sep 2019 13:25:23 | WBPerson4025 | ||||
Remark | [130916 gw3] Autoconversion from AG1201_M57.2.T10. Created this isoform based on the SL1 site. | Curator_confirmed | WBPerson4025 | |||
Feature_evidence | WBsf175852 | |||||
[190902 gw3] This CDS has been updated based on the Nanopore data and the papers which describe an isoform starting in exon 7. There is a TSS region defined by the Gu et al. data just upstream of the start of this isoform. | Paper_evidence | WBPaper00026866 | ||||
WBPaper00001622 | ||||||
WBPaper00040429 | ||||||
Curator_confirmed | WBPerson4025 | |||||
Method | curated |