WormBase Tree Display for CDS: T22C8.8
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| T22C8.8 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | T22C8 | |||
| Structure | Source_exons | 1 | 57 | |||
| 239 | 434 | |||||
| 514 | 663 | |||||
| 953 | 1185 | |||||
| DB_info | Database | TrEMBL | UniProtAcc | G5ED30 | ||
| UniProt | UniProtAcc | G5ED30 | ||||
| UniProt_GCRP | UniProtAcc | G5ED30 | ||||
| AlphaFold | entry | G5ED30 | ||||
| NCBI_protein | GI_number | GI:26985862 | ||||
| TREEFAM | TREEFAM_ID | TF312855 | ||||
| Protein_id | CHROMOSOME_II | CAA88880 | 2 | |||
| DB_remark | VAB-9 protein; contains similarity to Pfam domain PF00822 (PMP-22/EMP/MP20/Claudin family); contains similarity to Interpro domains IPR004031 (PMP-22/EMP/MP20/Claudin), IPR015664 (P53-induced protein) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00006875 | ||||
| Corresponding_transcript | T22C8.8.1 | |||||
| Corresponding_protein | CE32938 | |||||
| Corresponding_PCR_product | cenix:150-h7 | |||||
| mv_T22C8.8 | ||||||
| sjj_T22C8.8 | ||||||
| smd_T22C8.8 | ||||||
| smd_T22C8.8:3 | ||||||
| Corresponding_oligo_set (14) | ||||||
| Matching_cDNA (40) | ||||||
| RNAi_result | WBRNAi00073283 | |||||
| WBRNAi00019018 | ||||||
| WBRNAi00065106 | ||||||
| WBRNAi00092872 | ||||||
| WBRNAi00035805 | ||||||
| WBRNAi00053821 | ||||||
| Microarray_results | SMD_T22C8.8 | |||||
| SMD_T22C8.8:2 | ||||||
| SMD_T22C8.8:3 | ||||||
| 177583_at | ||||||
| A_12_P115340 | ||||||
| Aff_T22C8.8 | ||||||
| GPL13394_WBGene00006875 | ||||||
| GPL13914_T22C8.8 | ||||||
| GPL14144_T22C8.8_464-523_0.956_2_A | ||||||
| GPL14144_T22C8.8_486-545_0.940_5_B | ||||||
| GPL14144_T22C8.8_582-641_0.707_70_C | ||||||
| GPL3518_CE32938 | ||||||
| GPL8304_CE_WBGene00006875_A | ||||||
| GPL8673_T22C8_8P00056 | ||||||
| GPL8673_T22C8_8P00224 | ||||||
| GPL8673_T22C8_8P00460 | ||||||
| GPL9450_T22C8.8 | ||||||
| cea2.p.47475 | ||||||
| Brief_identification | Transmembrane protein 47 | Accession_evidence | UniProt | TR:G5ED30 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
