WormBase Tree Display for CDS: F25C8.3d
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F25C8.3d | SMap | S_parent | Sequence | F25C8 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 95 | |||
809 | 883 | |||||
926 | 974 | |||||
1388 | 1507 | |||||
1553 | 1684 | |||||
2956 | 3580 | |||||
4400 | 4669 | |||||
4752 | 4910 | |||||
5338 | 5724 | |||||
5769 | 6174 | |||||
6224 | 6447 | |||||
6493 | 6656 | |||||
6730 | 6848 | |||||
7881 | 8299 | |||||
8928 | 9088 | |||||
9141 | 9717 | |||||
9762 | 9863 | |||||
9987 | 10118 | |||||
10399 | 10560 | |||||
10652 | 10765 | |||||
11027 | 11363 | |||||
11410 | 11485 | |||||
11566 | 11592 | |||||
11865 | 12780 | |||||
13408 | 13646 | |||||
13732 | 13767 | |||||
14161 | 14247 | |||||
14294 | 14446 | |||||
14509 | 14910 | |||||
14981 | 15736 | |||||
15821 | 16110 | |||||
16161 | 16842 | |||||
16900 | 17167 | |||||
17223 | 17515 | |||||
17559 | 18131 | |||||
18177 | 18258 | |||||
18803 | 18885 | |||||
DB_info | Database | SwissProt | UniProtAcc | Q9XV66 | ||
UniProtIsoformAcc | Q9XV66-4 | |||||
UniProt | UniProtAcc | Q9XV66 | ||||
UniProt_GCRP | UniProtAcc | Q9XV66 | ||||
AlphaFold | entry | Q9XV66 | ||||
NCBI_protein | GI_number | GI:225878027 | ||||
TREEFAM | TREEFAM_ID | TF313531 | ||||
Protein_id | CHROMOSOME_V | CAX65056 | 1 | |||
DB_remark | UNC-80 protein; contains similarity to Pfam domains PF15778 (UNC80 N-terminal), PF19424 (Protein UNC80 central region), PF20262 (Protein UNC80 C-terminal region); contains similarity to Interpro domains IPR045852 (Protein UNC80, central region), IPR031542 (Cation channel complex component UNC80, N-terminal), IPR046460 (Protein UNC80, C-terminal), IPR016024 (Armadillo-type fold) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Confirmed | |||||
Isoform | From_analysis | RNASeq_Hillier_elegans | ||||
Visible | Gene | WBGene00006812 | ||||
Corresponding_transcript | F25C8.3d.1 | |||||
Corresponding_protein | CE43592 | |||||
Corresponding_PCR_product | cenix:46-e9 | |||||
mv_F25C8.3 | ||||||
sjj_F25C8.3 | ||||||
Corresponding_oligo_set (16) | ||||||
Matching_cDNA (12) | ||||||
RNAi_result (12) | ||||||
Microarray_results (25) | ||||||
Brief_identification | Protein unc-80 | Accession_evidence | UniProt | SP:Q9XV66 | ||
RNASeq_FPKM (74) | ||||||
Last_reviewed | 16 Jan 2012 00:00:00 | WBPerson4025 | ||||
Remark | [090326 gw3] Created this isoform based on the Hillier short-read data. It has a small extra internal exon. | Curator_confirmed | WBPerson4025 | |||
From_analysis | RNASeq_Hillier_elegans | |||||
Method | curated |