CBG04423b | SMap | S_parent | Sequence | cb25.fpc0081 |
| Structure | Source_exons | 1 | 196 |
| | | 246 | 901 |
| | | 949 | 1783 |
| | | 1833 | 3706 |
| | | 3756 | 3938 |
| | | 3982 | 4135 |
| | | 4307 | 4339 |
| | | 4559 | 5038 |
| | | 5166 | 5656 |
| | | 5707 | 7920 |
| | | 7974 | 9425 |
| | | 9475 | 9906 |
| | | 10111 | 11007 |
| | | 11337 | 11470 |
| | | 11519 | 12266 |
| | | 12315 | 12611 |
| DB_info | DB_remark | CBR-EPI-1 protein; contains similarity to Pfam domains PF00052 (Laminin B (Domain IV)), PF00053 (Laminin EGF domain), PF00054 (Laminin G domain), PF00055 (Laminin N-terminal (Domain VI)), PF02210 (Laminin G domain), PF06009 (Laminin Domain II); contains similarity to Interpro domains IPR000034 (Laminin IV), IPR008211 (Laminin, N-terminal), IPR000742 (EGF-like domain), IPR013320 (Concanavalin A-like lectin/glucanase domain superfamily), IPR001791 (Laminin G domain), IPR002049 (Laminin-type EGF domain), IPR008979 (Galactose-binding-like domain superfamily), IPR010307 (Laminin domain II), IPR038684 () |
| Origin | From_laboratory | CB |
| | Species | Caenorhabditis briggsae |
| Properties | Coding | CDS |
| | | Prediction_status | Confirmed |
| | Isoform | Curator_confirmed | WBPerson4025 |
| Visible | Gene | WBGene00027093 |
| | Corresponding_transcript | CBG04423b.1 |
| | Corresponding_protein | CBP43260 |
| | Corresponding_oligo_set | GPL8303_CB6_WBGene00027093_A |
| | | GPL8303_CB6_WBGene00027093_B |
| | | GPL8303_CB6_WBGene00027093_C |
| | | GPL8303_CB6_WBGene00027093_D |
| | | GPL8303_CB6_WBGene00027093_E |
| | | GPL14143_CBG04423_2014-2073_0.808_122_B |
| | | GPL14143_CBG04423_2334-2393_0.803_144_A |
| | | GPL14143_CBG04423_10566-10625_0.885_32_C |
| | Matching_cDNA | briggsae_GG7783|c4_g1_i1 | Inferred_automatically | transcript_builder.pl |
| | Microarray_results | GPL8303_CB6_WBGene00027093_A |
| | | GPL8303_CB6_WBGene00027093_B |
| | | GPL8303_CB6_WBGene00027093_C |
| | | GPL8303_CB6_WBGene00027093_D |
| | | GPL8303_CB6_WBGene00027093_E |
| | | GPL14143_CBG04423_2014-2073_0.808_122_B |
| | | GPL14143_CBG04423_2334-2393_0.803_144_A |
| | | GPL14143_CBG04423_10566-10625_0.885_32_C |
| | RNASeq_FPKM | WBls:0000002 | 0.004522 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351 |
| | | | 0.005768 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717 |
| | | | 0.780921 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749 |
| | | | 2.42904 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718 |
| | | WBls:0000003 | 0.007609 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706 |
| | | | 0.020749 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707 |
| | | | 0.079389 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708 |
| | | WBls:0000004 | 0.005451 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070 |
| | | | 0.008503 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656 |
| | | | 1.21843 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087 |
| | | | 1.71461 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655 |
| | | | 3.64968 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069 |
| | | WBls:0000024 | 0.016174 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710 |
| | | | 0.029643 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786 |
| | | | 0.046895 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790 |
| | | | 0.051263 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791 |
| | | | 0.051901 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789 |
| | | | 0.061273 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787 |
| | | | 0.156835 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788 |
| | | | 11.462 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709 |
| | | | 14.0636 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711 |
| | | | 6.2571 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748 |
| | | WBls:0000027 | 11.4908 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079 |
| | | | 28.3304 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088 |
| | | | 3.62558 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666 |
| | | | 8.81771 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712 |
| | | WBls:0000035 | 5.57931 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713 |
| | | WBls:0000038 | 1.43546 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714 |
| | | | 14.3552 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081 |
| | | | 1.49997 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715 |
| | | | 20.4455 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089 |
| | | WBls:0000041 | 13.9027 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953 |
| | | | 14.5766 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954 |
| | | | 16.0264 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958 |
| | | | 18.1211 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955 |
| | | | 3.92046 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957 |
| | | WBls:0000063 | 14.9386 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667 |
| | | | 15.7504 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120 |
| | | | 17.0147 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119 |
| | | | 17.3404 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668 |
| | | | 25.3279 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086 |
| | | | 7.34575 | From_analysis | RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716 |
| | Last_reviewed | 31 Aug 2016 10:21:20 | WBPerson4025 |
| | Remark | [160826 gw3] This structure has been created based on the Trinity model 'briggsae_GG7783|c4_g1_i1-chrIV-1'. | Curator_confirmed | WBPerson4025 |
| Method | curated |