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WormBase Tree Display for Gene: WBGene00027093

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Name Class

WBGene00027093SMapS_parentSequencecb25.fpc0081
IdentityVersion2
NameCGC_nameCbr-epi-1From_analysisInferred_from_orthology
Sequence_nameCBG04423
Molecular_nameCBG04423a
CBG04423a.1
CBP45548
CBG04423b
CBP43260
CBG04423b.1
Other_nameCBG_04423Accession_evidenceNDBHE601251
Public_nameCbr-epi-1
SpeciesCaenorhabditis briggsae
HistoryVersion_change108 Sep 2004 10:51:56WBPerson1971EventImportedInitial conversion from brigace
220 Sep 2007 17:07:04WBPerson2970Name_changeCGC_nameCbr-epi-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classepi
AlleleWBVar00017789
WBVar00109304
WBVar00109305
WBVar00017779
WBVar00017784
RNASeq_FPKMWBls:000000213.0577From_analysisRNASeq.briggsae.WBls:0000002.control_mean
16.4152From_analysisRNASeq.briggsae.WBls:0000002.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
17.0994From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
5.65853From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
11.8584From_analysisRNASeq.briggsae.WBls:0000002.control_mean
12.3379From_analysisRNASeq.briggsae.WBls:0000002.control_median
8.26064From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
WBls:000000323.3738From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
RNASeq.briggsae.WBls:0000003.control_median
34.1353From_analysisRNASeq.briggsae.WBls:0000003.control_mean
RNASeq.briggsae.WBls:0000003.control_median
44.8969From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
23.2197From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
30.4968From_analysisRNASeq.briggsae.WBls:0000003.control_mean
WBls:000000449.3711From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
50.7358From_analysisRNASeq.briggsae.WBls:0000004.control_mean
RNASeq.briggsae.WBls:0000004.control_median
52.1005From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
47.8606From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
49.4676From_analysisRNASeq.briggsae.WBls:0000004.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
52.894From_analysisRNASeq.briggsae.WBls:0000004.control_mean
65.6702From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
WBls:0000024 (12)
WBls:000002719.207From_analysisRNASeq.briggsae.WBls:0000027.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
27.3602From_analysisRNASeq.briggsae.WBls:0000027.control_mean
55.7253From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
7.14834From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
24.0262From_analysisRNASeq.briggsae.WBls:0000027.control_median
27.7315From_analysisRNASeq.briggsae.WBls:0000027.control_mean
28.8454From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
WBls:000003529.7243From_analysisRNASeq.briggsae.WBls:0000035.control_mean
RNASeq.briggsae.WBls:0000035.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003814.3777From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
19.4831From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
21.7551From_analysisRNASeq.briggsae.WBls:0000038.control_median
22.1671From_analysisRNASeq.briggsae.WBls:0000038.control_mean
24.027From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
30.7805From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004114.5816From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
18.7552From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.3536From_analysisRNASeq.briggsae.WBls:0000041.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
21.3303From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
16.9419From_analysisRNASeq.briggsae.WBls:0000041.control_mean
20.5922From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
7.85205From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
WBls:000006316.3359From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
17.0286From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
17.3425From_analysisRNASeq.briggsae.WBls:0000063.control_median
RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
17.7697From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
18.7657From_analysisRNASeq.briggsae.WBls:0000063.control_mean
25.3516From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
17.5561From_analysisRNASeq.briggsae.WBls:0000063.control_median
18.8161From_analysisRNASeq.briggsae.WBls:0000063.control_mean
19.0685From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
WBls:000010120.8419From_analysisRNASeq.briggsae.total_over_all_stages.control_median
23.8711From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
21.3303From_analysisRNASeq.briggsae.total_over_all_stages.control_median
25.3846From_analysisRNASeq.briggsae.total_over_all_stages.control_mean
GO_annotation00130725
Ortholog (35)
ParalogWBGene00027029Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00029573Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032168Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032203Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032251Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00032318Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00039108Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042278Caenorhabditis briggsaeFrom_analysisWormBase-Compara
WBGene00042473Caenorhabditis briggsaeFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to be involved in cell adhesion. Is an ortholog of C. elegans epi-1. In C. elegans, epi-1 is involved in several processes, including basement membrane organization; generation of neurons; and response to misfolded protein.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSCBG04423a
CBG04423b
Corresponding_CDS_historyCBG04423:bp194
CBG04423:bp255
Corresponding_transcriptCBG04423a.1
CBG04423b.1
Other_sequence (23)
Experimental_infoExpr_patternExpr1061037
Microarray_resultsGPL8303_CB6_WBGene00027093_A
GPL8303_CB6_WBGene00027093_B
GPL8303_CB6_WBGene00027093_C
GPL8303_CB6_WBGene00027093_D
GPL8303_CB6_WBGene00027093_E
GPL14143_CBG04423_2014-2073_0.808_122_B
GPL14143_CBG04423_2334-2393_0.803_144_A
GPL14143_CBG04423_10566-10625_0.885_32_C
MethodGene