WormBase Tree Display for CDS: C01B7.6
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C01B7.6 | Evidence | Inferred_automatically | make_isoforms.pl | |||
---|---|---|---|---|---|---|
SMap | S_parent | Sequence | C01B7 | |||
Structure | Source_exons (15) | |||||
DB_info | Database | KEGG | KEGG_id | 2.3.2.33 | ||
SwissProt | UniProtAcc | Q17551 | ||||
UniProt | UniProtAcc | Q17551 | ||||
UniProt_GCRP | UniProtAcc | Q17551 | ||||
AlphaFold | entry | Q17551 | ||||
NCBI_protein | GI_number | GI:351018187 | ||||
TREEFAM | TREEFAM_ID | TF313151 | ||||
Protein_id | CHROMOSOME_V | CCD62087 | 1 | |||
DB_remark | RPM-1 protein; contains similarity to Pfam domains PF00415 (Regulator of chromosome condensation (RCC1) repeat), PF03256 (Anaphase-promoting complex, subunit 10 (APC10)), PF08005 (PHR domain), PF13540 (Regulator of chromosome condensation (RCC1) repeat); contains similarity to Interpro domains IPR004939 (APC10/DOC domain), IPR001841 (Zinc finger, RING-type), IPR038648 (PHR domain superfamily), IPR012983 (PHR), IPR009091 (Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II), IPR013083 (Zinc finger, RING/FYVE/PHD-type), IPR008979 (Galactose-binding-like domain superfamily), IPR000408 (Regulator of chromosome condensation, RCC1), IPR000315 (B-box-type zinc finger) | |||||
Origin | From_laboratory | RW | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | WBGene00004457 | ||||
Corresponding_transcript | C01B7.6.1 | |||||
Corresponding_protein | CE06730 | |||||
Corresponding_PCR_product | cenix:159-a12 | |||||
cenix:39-e7 | ||||||
mv_C01B7.6 | ||||||
sjj2_C01B7.6 | ||||||
sjj_C01B7.6 | ||||||
Corresponding_oligo_set (28) | ||||||
Matching_cDNA (33) | ||||||
RNAi_result (11) | ||||||
Microarray_results (28) | ||||||
Brief_identification | E3 ubiquitin-protein ligase rpm-1 | Accession_evidence | UniProt | SP:Q17551 | ||
RNASeq_FPKM (74) | ||||||
Method | curated |