WormBase Tree Display for CDS: C13F10.4
expand all nodes | collapse all nodes | view schema
| C13F10.4 | Evidence | Inferred_automatically | make_isoforms.pl | |||
|---|---|---|---|---|---|---|
| SMap | S_parent | Sequence | C13F10 | |||
| Structure | Source_exons (12) | |||||
| DB_info | Database | TrEMBL | UniProtAcc | O01485 | ||
| UniProt | UniProtAcc | O01485 | ||||
| UniProt_GCRP | UniProtAcc | O01485 | ||||
| AlphaFold | entry | O01485 | ||||
| NCBI_protein | GI_number | GI:351021102 | ||||
| TREEFAM | TREEFAM_ID | TF300706 | ||||
| Protein_id | CHROMOSOME_V | CCD63114 | 1 | |||
| DB_remark | SOAP-1 protein; contains similarity to Pfam domain PF20210 (Laa1/Sip1/HEATR5 HEAT repeat region); contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR040108 (Laa1/Sip1/HEATR5), IPR016024 (Armadillo-type fold), IPR046837 (Laa1/Sip1/HEATR5-like, HEAT repeat region) | |||||
| Origin | From_laboratory | RW | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Visible | Gene | WBGene00015743 | ||||
| Corresponding_transcript | C13F10.4.1 | |||||
| Corresponding_protein | CE08145 | |||||
| Corresponding_PCR_product | cenix:39-a11 | |||||
| mv_C13F10.4 | ||||||
| sjj_C13F10.4 | ||||||
| Corresponding_oligo_set (13) | ||||||
| Matching_cDNA (71) | ||||||
| RNAi_result | WBRNAi00040448 | |||||
| WBRNAi00008385 | ||||||
| WBRNAi00024545 | ||||||
| WBRNAi00071541 | ||||||
| WBRNAi00103186 | ||||||
| WBRNAi00071677 | ||||||
| WBRNAi00002372 | ||||||
| Microarray_results (15) | ||||||
| Brief_identification | HEAT repeat-containing protein 5B | Accession_evidence | UniProt | TR:O01485 | ||
| RNASeq_FPKM (74) | ||||||
| Method | curated |
