WormBase Tree Display for CDS: CBG00602
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| CBG00602 | SMap | S_parent | Sequence | cb25.fpc0011b | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 314 | ||
| 369 | 630 | ||||
| DB_info | Database | UniProt | UniProtAcc | A8WNH3 | |
| UniProtId | A8WNH3_CAEBR | ||||
| TrEMBL | UniProtAcc | A8WNH3 | |||
| UniProt_GCRP | UniProtAcc | A8WNH3 | |||
| TREEFAM | TREEFAM_ID | TF105907 | |||
| Protein_id | cb25.fpc0011b | CAP22027 | 1 | ||
| DB_remark | CBR-SGNH-1 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif); contains similarity to Interpro domains IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR035979 (RNA-binding domain superfamily), IPR000504 (RNA recognition motif domain) | ||||
| Origin | From_laboratory | CB | |||
| Species | Caenorhabditis briggsae | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | WBGene00023974 | |||
| Corresponding_transcript | CBG00602.1 | ||||
| Corresponding_protein | CBP05833 | ||||
| Corresponding_oligo_set | GPL8303_CB6_WBGene00023974_A | ||||
| GPL8303_CB6_WBGene00023974_B | |||||
| GPL14143_CBG00602_170-229_0.889_16_A | |||||
| Matching_cDNA | briggsae_GG4913|c35_g1_i1 | Inferred_automatically | transcript_builder.pl | ||
| Microarray_results | GPL8303_CB6_WBGene00023974_A | ||||
| GPL8303_CB6_WBGene00023974_B | |||||
| GPL14143_CBG00602_170-229_0.889_16_A | |||||
| RNASeq_FPKM (9) | |||||
| Last_reviewed | 31 Aug 2016 10:21:19 | WBPerson4025 | |||
| Remark | [gffnote] Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP05833 ; Gene WBGene00023974 | ||||
| [20080722 tb] Modified based on Jigsaw gene ContigchrII.briggsae.jigsaw.616 | |||||
| [160826 gw3] The structure of this CDS has been confirmed by the Trinity model 'briggsae_GG4913|c35_g1_i1-chrIII-1b'. | Curator_confirmed | WBPerson4025 | |||
| Method | curated |
