WormBase Tree Display for Gene: WBGene00023974

WBGene00023974 SMap: S_parent: Sequence: cb25.fpc0011b
  Identity: Version: 5
    Name: CGC_name: Cbr-sgnh-1 From_analysis: Inferred_from_orthology
      Sequence_name: CBG00602
      Molecular_name: CBG00602
        CBG00602.1
        CBP05833
      Other_name: CBG_00602 Accession_evidence: NDB HE600982
      Public_name: CBG00602
    DB_info: Database: NDB locus_tag CBG_00602
    Species: Caenorhabditis briggsae
    History: Version_change: 1 08 Sep 2004 10:51:53 WBPerson1971 Event: Imported: Initial conversion from brigace
        2 20 Mar 2018 10:26:12 WBPerson4025 Name_change: CGC_name: Cbr-sgnh-1
        3 08 Feb 2019 15:42:29 WBPerson1983 Name_change: CGC_name: Removed
        4 08 May 2019 10:09:26 WBPerson1983 Name_change: CGC_name: Cbr-sgnh-1
        5 04 Jun 2020 14:38:22 WBPerson1983 Name_change: CGC_name: Removed
        6 28 Jul 2021 11:12:29 WBPerson1983 Name_change: CGC_name: Cbr-sgnh-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: sgnh
    RNASeq_FPKM: WBls:0000002 0.557921 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
        0.820888 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
        0.821994 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
        1.08275 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
        0.598663 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
        0.710329 From_analysis: RNASeq.briggsae.WBls:0000002.control_median
        0.765332 From_analysis: RNASeq.briggsae.WBls:0000002.control_mean
      WBls:0000003 101.948 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
        123.743 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
            RNASeq.briggsae.WBls:0000003.control_median
        145.538 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
            RNASeq.briggsae.WBls:0000003.control_median
        137.784 From_analysis: RNASeq.briggsae.WBls:0000003.control_mean
        165.865 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
      WBls:0000004 38.5304 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
        46.8559 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
            RNASeq.briggsae.WBls:0000004.control_median
        55.1815 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
        39.1141 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
        44.142 From_analysis: RNASeq.briggsae.WBls:0000004.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
        44.3612 From_analysis: RNASeq.briggsae.WBls:0000004.control_mean
        44.8382 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
      WBls:0000024 0.080799 From_analysis: RNASeq.briggsae.WBls:0000024.control_median
        0.137563 From_analysis: RNASeq.briggsae.WBls:0000024.control_mean
        0.161599 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
        0.344333 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
        0.388652 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
            RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
        0.604144 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
        2.12569 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
      WBls:0000027 0 From_analysis: RNASeq.briggsae.WBls:0000027.control_mean
            RNASeq.briggsae.WBls:0000027.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
            RNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
      WBls:0000035 0 From_analysis: RNASeq.briggsae.WBls:0000035.control_mean
            RNASeq.briggsae.WBls:0000035.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
      WBls:0000038 0.133291 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
        0.589025 From_analysis: RNASeq.briggsae.WBls:0000038.control_median
        0.80714 From_analysis: RNASeq.briggsae.WBls:0000038.control_mean
        1.04476 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
        0 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
        2.05051 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
      WBls:0000041 0.729951 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
        3.04275 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        3.304 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
        3.52071 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
        3.73742 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
        4.39964 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
        1.69895 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
        2.78466 From_analysis: RNASeq.briggsae.WBls:0000041.control_mean
        2.83801 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
        3.07101 From_analysis: RNASeq.briggsae.WBls:0000041.control_median
      WBls:0000063 0.36226 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        0.465281 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
        1.34602 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
        0 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
            RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
        0.232641 From_analysis: RNASeq.briggsae.WBls:0000063.control_median
        0.556988 From_analysis: RNASeq.briggsae.WBls:0000063.control_mean
        1.53063 From_analysis: RNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
      WBls:0000101 0.465281 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        12.4628 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
        0.775972 From_analysis: RNASeq.briggsae.total_over_all_stages.control_median
        17.4223 From_analysis: RNASeq.briggsae.total_over_all_stages.control_mean
    GO_annotation: 00127304
      00127305
    Contained_in_operon: CBOPA0027
    Ortholog (41)
    Paralog: WBGene00024801 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027063 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027836 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00027872 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00035657 Caenorhabditis briggsae From_analysis: WormBase-Compara
      WBGene00087396 Caenorhabditis briggsae From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Is an ortholog of C. elegans sgnh-1. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: CBG00602
    Corresponding_CDS_history: CBG00602:bp194
    Corresponding_transcript: CBG00602.1
  Experimental_info: Expr_pattern: Expr1058500
    Microarray_results: GPL8303_CB6_WBGene00023974_A
      GPL8303_CB6_WBGene00023974_B
      GPL14143_CBG00602_170-229_0.889_16_A
  Remark: [190208 pad] The CGC name Cbr-sgnh-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
    [200603 pad] The CGC name Cbr-sgnh-1 was deleted as there was no evidence to support it. Curator_confirmed: WBPerson1983
  Method: Gene