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WormBase Tree Display for CDS: CBG04377

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Name Class

CBG04377SMapS_parentSequencecb25.fpc0078
StructureSource_exons154
111179
84198557
86448987
92809459
1079510977
1113511694
1283213250
1384414494
1516215367
DB_infoDatabaseUniProtUniProtAccA8WXE3
UniProtIdA8WXE3_CAEBR
TrEMBLUniProtAccA8WXE3
UniProt_GCRPUniProtAccA8WXE3
Protein_idcb25.fpc0078CAP250942
DB_remarkCBR-PHM-2 protein; contains similarity to Pfam domains PF00076 (RNA recognition motif), PF02037 (SAP domain); contains similarity to Interpro domains IPR036361 (SAP domain superfamily), IPR012677 (Nucleotide-binding alpha-beta plait domain superfamily), IPR035979 (RNA-binding domain superfamily), IPR003034 (SAP domain), IPR000504 (RNA recognition motif domain)
OriginFrom_laboratoryCB
SpeciesCaenorhabditis briggsae
PropertiesCodingCDS
Prediction_statusPartially_confirmed
VisibleGeneWBGene00027063
Corresponding_transcriptCBG04377.1
Corresponding_proteinCBP47956
Corresponding_oligo_setGPL8303_CB6_WBGene00027063_A
GPL8303_CB6_WBGene00027063_B
GPL14143_CBG04377_634-693_0.779_122_B
GPL14143_CBG04377_1395-1454_0.589_364_A
GPL14143_CBG04377_1702-1761_0.741_187_C
Microarray_resultsGPL8303_CB6_WBGene00027063_A
GPL8303_CB6_WBGene00027063_B
GPL14143_CBG04377_634-693_0.779_122_B
GPL14143_CBG04377_1395-1454_0.589_364_A
GPL14143_CBG04377_1702-1761_0.741_187_C
RNASeq_FPKMWBls:000000226.7556From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP006033.SRX053351
27.5978From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392718
43.82From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP034522.SRX392717
4.89375From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000002.Hermaphrodite.WBbt:0007833.SRP011366.SRX127749
WBls:0000003104.83From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392708
112.994From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392706
90.3475From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000003.Hermaphrodite.WBbt:0007833.SRP034522.SRX392707
WBls:000000429.9645From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX100087
34.3407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089069
37.3392From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX089070
38.9092From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103655
41.4526From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000004.Hermaphrodite.WBbt:0007833.SRP006033.SRX103656
WBls:000002413.0871From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311787
13.5186From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392711
14.6984From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311786
14.9407From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311788
15.282From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311789
16.0292From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311791
17.6468From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP026198.SRX311790
18.0492From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392709
19.522From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP034522.SRX392710
8.80676From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000024.Hermaphrodite.WBbt:0007833.SRP011366.SRX127748
WBls:000002711.5947From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX052079
17.2241From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP034522.SRX392712
4.85157From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX103666
9.07685From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000027.Hermaphrodite.WBbt:0007833.SRP006033.SRX100088
WBls:000003518.3562From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000035.Hermaphrodite.WBbt:0007833.SRP034522.SRX392713
WBls:000003810.9097From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX052081
16.9022From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392714
24.4081From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP034522.SRX392715
8.53373From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000038.Hermaphrodite.WBbt:0007833.SRP006033.SRX100089
WBls:000004132.0865From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191957
50.6295From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191956
50.666From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Male.WBbt:0007833.SRP016006.SRX191958
51.4594From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191953
51.7219From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191955
55.2006From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000041.Hermaphrodite.WBbt:0007833.SRP016006.SRX191954
WBls:000006322.5743From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089119
23.9918From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX089120
25.4981From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103667
27.3444From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX103668
29.3432From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP006033.SRX100086
34.3913From_analysisRNASeq.briggsae.WBStrain00040935.WBls:0000063.Hermaphrodite.WBbt:0007833.SRP034522.SRX392716
Last_reviewed07 Feb 2017 16:17:09WBPerson4025
Remark[gffnote] orthologous to F32B4.4 by best mutual match (eval=1e-42) ; Ortholog F32B4.4 ; Supported_by_ortholog ; Supported_by_paralogs ; Supported_by_multiple_predictions ; Brigpep BP:CBP21438 ; Gene WBGene00027063
[20080722 tb] Modified based on Jigsaw gene ContigchrI_random.briggsae.jigsaw.175
[160826 gw3] This gene has been split based on the Trinity model 'briggsae-intron-chrI-2073.extended'.Curator_confirmedWBPerson4025
[170207 gw3] This CDS has been updated based on the RNAseq data. The genes CBG04377 and CBG29955 have been merged based on the RNASeq data. There are gaps in the assembly in this region.Curator_confirmedWBPerson4025
From_analysisRNASeq
Methodcurated